Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq191 96.9 6e-15 seq61440 89.7 9e-13 >seq191 Length=3465010 Score = 96.9 bits (106), Expect = 6e-15 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||| ||||| ||||| ||||| || |||||||| |||||||| | || ||||| Sbjct 1561494 GCATTTTTCGGAGCCCAGCTGAATTCCTTCATCCATGTGATTATGTATTCATACTATGGG 1561435 Query 52117 ATGGCCGCTTGTGGTCCTATG-TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 || | || | ||| || | ||||||| |||||| ||||||||||| || || || || Sbjct 1561434 TTGACTGCCTTTGGCCCGTGGATTCAGAA-GTATCTTTGGTGGAAACGATACCTGACCAT 1561376 Query 52176 AATGCAGTTGGT 52187 ||||| |||| Sbjct 1561375 GTTGCAGCTGGT 1561364 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 51901 TGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGG 51960 |||| ||||| ||||| || || || || || ||||| || || |||||||| || ||| Sbjct 1562678 TGGTGGTACTTCATATCTAAGGGAATTGAGTATTTGGACACAGTGTTTTTCATCCTGAGG 1562619 Query 51961 AAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTA 52020 || ||| || || || ||| || || ||||||||||| | ||| |||||||| | Sbjct 1562618 AAGAAAAACAACCAAGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACATTG 1562559 Query 52021 GGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAGG 52057 | ||||| || ||||| ||| | || || || |||| Sbjct 1562558 TGGTGGATTGGAATTAAGTGGGTCGCAGGGGGACAGG 1562522 >seq61440 Length=516 Score = 89.7 bits (98), Expect = 9e-13 Identities = 134/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 135636 CGATCCTGTTTTGCATATAGAACTTAGGAGATGGGCGGATGTTTTTATTATAGCGCCCTT 135695 |||| |||||| ||||| ||||| |||| ||||||||||| | | || || ||||| Sbjct 39 CGATGGTGTTTTACATATTGAACTGAGGAAATGGGCGGATGCCATGCTAATCGCTCCCTT 98 Query 135696 AACGGCAAATACGTTAGCAAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTAT 135755 || || | | || ||||||||| ||| || | || ||||| ||||||| || Sbjct 99 GGACGCTAACAGTCTCGCTAAAATAGCTGTTGGAATTAGTGACAATTTGGTGACGTCCAT 158 Query 135756 TGTAAGAGCCTGGGATACAAACAAACCAC-TCATTTTCTGTCCTGCAATGAATACTCTTA 135814 ||| |||| |||||| | | || || | | ||||| | || || ||||| ||| | | Sbjct 159 TGTCCGAGCTTGGGATCCCAGGAAGCCGCTTTATTTTGCG-CCAGCGATGAACACTATGA 217 Query 135815 TGTGGGAA 135822 |||||||| Sbjct 218 TGTGGGAA 225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920003404569000