Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq150 122 1e-22 seq314 105 8e-18 seq211 100 3e-16 seq8 100 3e-16 seq1549 98.7 1e-15 seq441 98.7 1e-15 seq98 98.7 1e-15 seq192 91.5 2e-13 seq584 86.0 7e-12 >seq150 Length=4498840 Score = 122 bits (134), Expect = 1e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||| || |||| ||| |||||| ||||||||||| || | |||||| || | || || Sbjct 34198 CACTAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGACAGAGTGCGGCCATCCTC 34257 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||| || || | || || || | |||||| || | || | || ||||||||| Sbjct 34258 TAGCTGTTTGCCCACAAAAATCAGACACTGCTGATCAGGTGGGATGCCCTCCTTGTCTTG 34317 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 |||||| ||||| || | | ||||| || | || || |||| |||||||| || Sbjct 34318 GATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTT 34377 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || ||||| |||||||| ||||| Sbjct 34378 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 34407 >seq314 Length=1336125 Score = 105 bits (116), Expect = 8e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 1142743 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 1142684 Query 60124 TATACTACCGAGGATTGA 60141 ||||||| |||||| ||| Sbjct 1142683 TATACTAACGAGGAATGA 1142666 >seq211 Length=2993106 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 76545 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 76486 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 76485 ATACTAACGAGGA 76473 >seq8 Length=20427491 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 19562069 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 19562010 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 19562009 ATACTAACGAGGA 19561997 >seq1549 Length=9383 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 7955 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 7896 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 7895 TACTAACGAGGA 7884 >seq441 Length=377441 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 14417 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 14358 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 14357 TACTAACGAGGA 14346 >seq98 Length=6767347 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4439550 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4439491 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 4439490 TACTAACGAGGA 4439479 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4431820 CTCCCCGTCGAGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4431761 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 4431760 TACTAACGAGGA 4431749 >seq192 Length=3444459 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1014703 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 1014644 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 1014643 ATACTAACGAGGA 1014631 >seq584 Length=118070 Score = 86.0 bits (94), Expect = 7e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| ||||| ||| ||| || ||||||||||| || | |||| | | || || Sbjct 48986 CACCAAGTGCAAGGTGGACTCATTCTGAATATTGTAGTCTGATGGAGTGTGGCCATCCTC 49045 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||||| || | | || || || |||||||||| | || | || ||||||||| Sbjct 49046 CAGCTGTTTGCTCACAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 49105 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 |||||| ||||| || | | |||| || | | || || | |||||||| || Sbjct 49106 GATTTTAACTTTGACATTCTCAATGATGTCACTGGGCTTAACCTCAAGGGTGATGGTCTT 49165 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| | || ||||| |||||||| ||||| Sbjct 49166 GCCTATCAGGGTCTTCACAAAGATCTGCAT 49195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569839647183000