Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq182 102 5e-17 seq103000 89.7 3e-13 >seq182 Length=3864254 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| || || || ||| | || |||| ||||||||||||||| Sbjct 2229819 TCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAG 2229760 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||||| ||||||||| || | || ||||| || ||||| ||| | | Sbjct 2229759 ATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 2229700 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || |||| |||||||| |||||||| || || ||||| Sbjct 2229699 TCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 2229640 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 2229639 AAGATCTGCAT 2229629 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| ||||| || | || || ||||| |||||||| ||||| Sbjct 2229627 CCACCCCTCAGACGCAGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGGAA 2229568 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||||||||| ||||||| ||||||||| ||| Sbjct 2229567 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGGGGG 2229508 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||| || ||||| ||| | | | || | || | | || || Sbjct 2229507 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 2229448 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || | || ||||| ||||||||||| Sbjct 2229447 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2229401 >seq103000 Length=415 Score = 89.7 bits (98), Expect = 3e-13 Identities = 162/236 (69%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || || ||||| | ||| ||||||||| || ||||| || || Sbjct 176 TCCTCCTCGAAGACGGAGAACAAGGTGAAGAGTTGATTCTTTCTGGATATTGTAATCAGA 235 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || | || ||||||||||| || || || || ||||| ||||| || || Sbjct 236 AAGAGTGCGTCCATCTTCCAACTGCTTTCCGGCAAAGATTAGCCGTTGCTGATCCGGTGG 295 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | || ||||| |||||| ||| | || | || | |||| | || || Sbjct 296 GATTCCTTCTTTGTCTTGAATCTTTGCCTTCACATTTTCAATGGTGTCGGAGGCCTCAAC 355 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTCGAA 34397 || | || || ||||| ||||| || |||||||||||||||||||| |||| || Sbjct 356 CTCGAGTGTAATTGTTTTCCCGGTTAGGGTTTTCACAAAGATCTGCAT-GCTCAAA 410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321982411916000