Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq120 1874 0.0 seq96 86.0 4e-12 seq13 84.2 2e-11 >seq120 Length=5247004 Score = 1874 bits (2078), Expect = 0.0 Identities = 1403/1648 (85%), Gaps = 33/1648 (2%) Strand=Plus/Plus Query 107133 ACAAGGGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTA 107192 || ||| || |||| | || ||||||||||| ||||||| |||||| |||| ||| Sbjct 4724789 ACGAGGATCCTAGGTGGATCTGGACTGAGGATACTTGTCTAGAGAAGAAATCTGGTTTTG 4724848 Query 107193 CCATCACTCTGGAGTTGAACTTGATGTTCT-------------GGATTAGTTTGTAATTA 107239 |||||||| |||||||||||||||||||| || ||||||||||||| Sbjct 4724849 CCATCACTGTGGAGTTGAACTTGATGTTCCTTGAGCCCATTCAGGGTTAGTTTGTAATTG 4724908 Query 107240 AAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTGCCTGTGCCCAAACTCTCCT 107299 |||||||||||||||||| |||||| || |||||| |||| ||||||| |||||||| | Sbjct 4724909 AAGGCATTTTGTTCTGTCTAAGGATTTCATCCTCCTCCTTCCCTGTGCACAAACTCTGCC 4724968 Query 107300 GATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCT 107359 ||||||||| ||||||||||| || ||||||||||||| | |||||| | |||||||| Sbjct 4724969 AATCTCCCATTCCATGAAGATGACTTGGTGGAAGAAGAAATTCTGCCGGAGGCATCATCT 4725028 Query 107360 GTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTT 107419 |||||| |||||||||||||||||||||| ||||| || |||||||||| ||||| | Sbjct 4725029 GTGGGCTTTGGGCTGCTATATGCTGCTGGCTCTTGTTGCTTTGAGACTTTCTCTCAGACT 4725088 Query 107420 TAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAG 107479 |||||||| |||| |||| |||||||||||||||||||||| || || |||||||||| Sbjct 4725089 GAAATGTGACGTAGTTTCCCTGGATCTGGAGTCCAGGGACTTGCAAAGCCAGCACTGTAA 4725148 Query 107480 GGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGAT 107539 |||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 4725149 GGACATCTTGTACAAGTCCCTGAAACTGCCAGCAAAGAGATCCATCAACTGTTCTGGGAT 4725208 Query 107540 CACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAA 107599 ||| ||||||||||||||||||||| || |||| ||||| ||||||||||| || ||||| Sbjct 4725209 CACCCGAGGGGACCAGGAAGCAGTGATCAAGGCTCTCCTGGACAACCTGGAGGTCAAGAA 4725268 Query 107600 AAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTT 107659 |||||| |||| |||| | ||| | ||||||||||| ||||| || ||||||| || Sbjct 4725269 GAAGCGGGAGCCTTTCACAGACACTGACTACCTCAACATGACCAGGGATTGTGAGCAGTT 4725328 Query 107660 CAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCAT 107719 |||||| |||||| |||||||| |||||||||||| | |||||| ||||||| ||||| Sbjct 4725329 TAAGGCCAAAAGGAGGTTCATACGGTTCCCACTGAGCAGAGAAGAATTAGACTTTCCCAT 4725388 Query 107720 TGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGT 107779 || ||||| |||||||||||||||||| |||||||||||||| ||||||||||||| || Sbjct 4725389 CGCTTACTCTATGGTGGTCCATGAGAAGGTTGAAAACTTTGAAAGGCTGCTGCGAGCTGT 4725448 Query 107780 GTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAA 107839 |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 4725449 GTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGAGAAGTCCCCAGAAACTTTCAA 4725508 Query 107840 AGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGT 107899 |||||| |||||| |||||||||| |||||||| |||||||||||||||||||| ||||| Sbjct 4725509 AGAGGCAGTCAAGTCCATTATTTCATGCTTCCCGAATGTCTTCATGGCCAGTAAATTGGT 4725568 Query 107900 CCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTT 107959 | ||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 4725569 TCGGGTGGTTTACGCCTCCTGGTCCAGGGTGCAGGCTGACCTGAACTGTATGGAAGACTT 4725628 Query 107960 GCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCAT 108019 ||||| |||| | ||||||||||| ||||||||||| || |||||||||||||| || || Sbjct 4725629 GCTCCGGAGCCCGGTGCCATGGAAATACTTACTGAACACCTGCGGGACAGACTTTCCTAT 4725688 Query 108020 AAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGA 108079 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 4725689 AAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAATGGGAAGAACAGTATGGA 4725748 Query 108080 GTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGA 108139 ||| ||| ||||| |||||| |||||| | |||||||||||| | ||| || |||||||| Sbjct 4725749 GTCAGAGATACCTACTGAGTACAAAAAGACTCGCTGGAAATATCACTACGAAGTGACAGA 4725808 Query 108140 CACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCAC 108199 ||| || | |||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 4725809 CACGTTGCAAGTAACCAACAAGATGAAGGACCCTCCCCCTGATAATTTACCTATGTTCAC 4725868 Query 108200 AGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA 108259 ||||||||||||| ||||||| ||||||| |||| |||||||||||||||| ||||| || Sbjct 4725869 AGGGAATGCCTATATTGTGGCTTCTCGAGGCTTTATCCAACATGTCTTAGAGAACCCCAA 4725928 Query 108260 ATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGC 108319 |||||| | ||| | ||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 4725929 ATCCCAGCGGCTGATCGAATGGGCCAAAGACACCTATAGCCCCGATGAACACCTCTGGGC 4725988 Query 108320 CACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACAT 108379 |||||||||||||| || |||||||||||||||||||| ||||||||||| |||||| Sbjct 4725989 TACCCTTCAGCGTGCACCATGGATGCCTGGCTCTGTTCCCTTCCACCCCAAGTTTCACAT 4726048 Query 108380 CTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAG 108439 |||||||||||| |||||||||||||| ||||||||||| ||||||||||||| |||| Sbjct 4726049 CTCAGACATGACGGCCATCGCCAGGCTGGTCAAGTGGCAAGACCACGAGGGAGACATCAG 4726108 Query 108440 CATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGG 108499 |||||||| |||||||| || |||||||||||||| | | |||| |||| |||| || Sbjct 4726109 TATGGGGGCACCTTATGCCCCTTGCTCTGGAATCCACCAGCGGGCTGTCTGTGTTTATGG 4726168 Query 108500 GGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCC 108559 ||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 4726169 GGCTGGGGACCTGCACTGGATTCTCCAGAACCATCACCTCTTGGCTAACAAGTTTGACCC 4726228 Query 108560 GAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTA 108619 | |||||||||||| || || ||||||||||||||||| |||| ||||||||||||| Sbjct 4726229 CAAGGTGGATGATAATGTTCTTCAGTGCTTAGAAGAGTATTTACGCTATAAGGCCATCTA 4726288 Query 108620 TGGGACTGAACTTTGAG----------------CTGC--ACTGTGGGCCAGGGACTG-TG 108660 |||| ||||||| |||| |||| | | ||| |||| || | || Sbjct 4726289 TGGGGCTGAACTCTGAGATACACCTTGAGAGAACTGCTACCCGAGGGGCAGGAACAGATG 4726348 Query 108661 CCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCA 108720 |||||||||||| ||| |||| || |||||||| || ||| ||||| |||||||| Sbjct 4726349 TAAACATGCCCAGGACGTGCTGGGACATTGTGGGGT-GGAGACCGGGGCTCTGGAATCCG 4726407 Query 108721 TGGCATCCCCCAGGGTCAGAGGGCTGCT 108748 |||||||||| | | || || ||||| Sbjct 4726408 CGGCATCCCCCGGTGGAAGGGGACTGCT 4726435 >seq96 Length=6608501 Score = 86.0 bits (94), Expect = 4e-12 Identities = 195/286 (68%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335 || |||| ||||| || || ||||| ||||| | ||||||||||| ||||| | | | Sbjct 981801 GAGTGGGCAAAAGATACATACAGCCCAGACGAGTATCTCTGGGCCACTATTCAGAG-GAT 981743 Query 108336 CCGTGGA-TGCCTGGCTC--TGTTCCTAGCCACCCCAAGTATCACATCTCAGACATG-AC 108391 | || | | || ||||| ||| | || | ||||| |||| ||||||||| || Sbjct 981742 GCCTGAAGTCCCGGGCTCACTGTCCTTAAGTTCT--AAGTACGACATGTCAGACATGCAC 981685 Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCC 108451 | | || |||||| | || |||||||||||| || || ||||| || ||| || || Sbjct 981684 T-CTATTGCCAGGTTTGTTAAGTGGCAGTACTTTGAAGGTGATGTTTCCAAGGGCGCCCC 981626 Query 108452 TTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCT 108511 || | || ||| || ||||| | | | | || ||| ||| || || ||| | Sbjct 981625 CTACCCGCCGTGCAGCGGCATCCACGTGCGCTCTGTATGTGTTTTCGGAGCTGGTGACTT 981566 Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||||||| || || || ||||| || || || ||||||||| Sbjct 981565 AAACTGGATGCTGCACGTGCACCACCTGTTTGCCAATAAGTTTGAC 981520 >seq13 Length=17585923 Score = 84.2 bits (92), Expect = 2e-11 Identities = 176/256 (69%), Gaps = 20/256 (8%) Strand=Plus/Minus Query 107782 ATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAG 107841 ||||||| | || | |||||||| || ||||||| ||| | ||| | || |||| Sbjct 10924614 ATGCCCC--AAAATGTCTACTGTGTTCATGTGGATGAAAAGGCGAGAGATGCATTTAAAG 10924557 Query 107842 AGGCGGTCAAGGCCATTATTTC-CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTC 107900 | || || ||| | |||| | ||||||||| |||| ||| |||| ||| ||| Sbjct 10924556 ATGCCGTGAAG-CAATTACTGGGCTGCTTCCCAAATGCCTTTCTGGCTTCCAAGATGGAG 10924498 Query 107901 CCGGTGGTTTATGCCTCCTGG----TCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGA 107956 || ||||| |||| ||| ||||| | || |||||||||||||| ||||||| Sbjct 10924497 CCAGTGGTCTATGG----TGGGATTTCCAGGCTCCAGGCTGACCTGAACTGCCTGGAAGA 10924442 Query 107957 CTTGCTCCAGAG-CTC---AGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACT 108012 | || || | ||| ||||| ||||||||| | || || |||||| ||| | Sbjct 10924441 CCTG----AGGGCCTCGGAGGTGCCCTGGAAGTACGCCATCAACACCTGCGGGCAAGATT 10924386 Query 108013 TCCCCATAAAGACCAA 108028 ||||| | || ||||| Sbjct 10924385 TCCCCCTGAAAACCAA 10924370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347094233542650