Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq39 120 3e-22 seq83363 91.5 1e-13 seq103000 86.0 6e-12 >seq39 Length=12483156 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || |||||||| ||||| || || || ||||| || || ||||| Sbjct 4311950 ACCTCATCTTTGCTAGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTT 4311891 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||| ||||| || ||||| || ||||| ||||||||||||||||| || Sbjct 4311890 CCCAGGTTCTGCTGATTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTA 4311831 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || |||||| ||| ||||| ||||| || Sbjct 4311830 CCTGTCTCGGTCTGAGACTCAATGATGGC 4311802 >seq83363 Length=456 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||||||||||||||| || |||| || || || ||||| | || || ||| | || Sbjct 172 CATGCAAATTTTCGTAAAAACCTTGACGGGGAAGACCATCACTTTGGAAGTGGAAGCCTC 231 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| | || || || ||| ||||||||||| | || || || || Sbjct 232 TGATACAATCGAGAATGTGAAGGCGAAAATTCAAGACAAGGAAGGAATTCCACCAGATCA 291 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 ||||||||| || || || || |||||| | ||||| | | | || | || || | Sbjct 292 GCAGCGTCTCATCTTTGCCGGAAAACAGCTTGAAGA-TGGACGTACCCTCTCTGACTACA 350 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| ||||| ||||| || || ||||| || || Sbjct 351 ACATCCAAAAGGAATCAACCCTCCATCTTGTTCT 384 >seq103000 Length=415 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || || || || || || ||||| || || |||| ||||| | || Sbjct 404 CATGCAGATCTTTGTGAAAACCCTAACCGGGAAAACAATTACACTCGAGGTTGAGGCCTC 345 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||||| | |||| || || || ||| | | |||| ||||| | || || || | Sbjct 344 CGACACCATTGAAAATGTGAAGGCAAAGATTCAAG-ACAAAGAAGGAATCCCACCGGATC 286 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTAT 31369 |||| || ||||| || || || || ||||||||||| | | | ||| | ||||| Sbjct 285 AGCAACGGCTAATCTTTGCCGGAAAGCAGTTGGAAGA-TGGACGCACTCTTTCTGATTAC 227 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || |||||||| |||||||| || || || Sbjct 226 AATATCCAGAAAGAATCAACTCTTCACCTTGTTCT 192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444224466162000