Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq240 264 1e-65 seq49 140 3e-28 seq285 82.4 7e-11 >seq240 Length=2402814 Score = 264 bits (292), Expect = 1e-65 Identities = 457/660 (69%), Gaps = 7/660 (1%) Strand=Plus/Minus Query 20924 CAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCC 20983 ||| || |||| ||| || |||||| |||||| || ||||| ||||| |||||||| || Sbjct 1020298 CAGCGGCTCAATGTGATTCATGTAAATGTGGGCATCTCCCAAAGTGTGTACAAAGTCACC 1020239 Query 20984 CGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTT 21043 || ||||||| |||| ||| || |||| || || || |||| ||||||||||||||| Sbjct 1020238 TGGCTTCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTT 1020179 Query 21044 AAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCC 21103 || || | || ||||||||||| | |||| || ||||||||||||||||||||| || Sbjct 1020178 GAAGGGCATGCCCAGGCCCATGTCTCCCGACCACTCGTACAGCTGGCAGGACAGCTCACC 1020119 Query 21104 CCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163 ||||||| ||||| || | | | || || ||||| ||| | ||||||| || Sbjct 1020118 GTTCACCACGTAGAACTGGCAAAGGGCAGGGCAGGGTGGGAGGGCCGTGAGCGCGAGATC 1020059 Query 21164 CGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATC 21223 || ||||| || ||||| | || | | || | || | || ||| || Sbjct 1020058 TTTTGGATTCCAGGCACACATGATGACGATTCTGTCATTAGGGTTGGTTTTGATTGTGTC 1019999 Query 21224 CACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTA 21283 ||| | |||||||||| || || | || || | | || | |||| Sbjct 1019998 AGTCACCTTCTGCAGCTGGTCTACTCCTTCGCCTGAATAATCTGAATCCATATCTTTGTA 1019939 Query 21284 CTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGC-GGC 21342 || ||||||||||| |||||||| || ||||| ||||| || ||||| || | | || Sbjct 1019938 TTCGGCCCCAAAATGCCTCCACTGAAAGCCGTAAACCGGGCCTAGATCTCCTGCTCTGGT 1019879 Query 21343 GGTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTT 21401 || ||| ||| | || | |||| ||| | |||||||| |||||||| ||||| Sbjct 1019878 GG----AGAATCCCAG-GCTGTCCAAGAAGTCTCGGGACCCACTGGCGTCCCAGATTTTC 1019824 Query 21402 ACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCC 21461 || || | ||||| || | | || ||||| ||| |||||||||||||||| || Sbjct 1019823 ACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAATCCC 1019764 Query 21462 TCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTGAGG 21521 |||| || | ||| || || | |||||| || | ||| ||||| || || || ||| Sbjct 1019763 TCCAAAACATCTTCCCAGAAAACACGTTTGGTTGTGAGCAGTGGAAATTCATCTCTCAGG 1019704 Query 21522 TTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTGTCCTCCCTC 21581 | || || ||||| | | |||||| ||| |||||| |||| | | ||| ||| || Sbjct 1019703 CTGTAGCGCGCCTGCATGCTGAACACCGACAGGGTGCCGGTGCCCATGCGGTCATCCTTC 1019644 >seq49 Length=11369404 Score = 140 bits (154), Expect = 3e-28 Identities = 136/175 (78%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||||| |||| ||| ||||||| || || || |||| |||||||||||||| || | Sbjct 7921596 TCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAATAGCTGGCGATGTTGAAGG 7921537 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | |||| |||||||||||||||||||||||| || Sbjct 7921536 GCACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCA 7921477 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163 ||||||| ||||| || | |||| || || ||||| ||||| ||| ||| || Sbjct 7921476 CCACGTAGAACTGGCAAAGGGCGTGGCAGGGCGGGAGGGCCATGAGCGGGAGATC 7921422 >seq285 Length=1675874 Score = 82.4 bits (90), Expect = 7e-11 Identities = 112/159 (70%), Gaps = 12/159 (8%) Strand=Plus/Minus Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004 ||||| || || || || || ||||| |||||||| ||| |||| ||| Sbjct 1652039 GTAAATGTATGCATCTCCTAAAGTGTGTACAAAGTC------------GCCTGTGATGTG 1651992 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064 | ||||| || || || |||| ||||| || |||||| || || || || |||||| | Sbjct 1651991 TGTGATCATGTAGGTGAGCAGGGTGTAGCGGGTGATGTTGAAGGGCACACCCAGGCCCCT 1651932 Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCC 21103 || | ||| ||||||||| ||||||||||||| || Sbjct 1651931 GTGTCCTGACAAGTGGTACAGCCGGCAGGACAGCTCACC 1651893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426333288678000