Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq260794 102 8e-17 seq103000 96.9 3e-15 seq83363 96.9 3e-15 seq182 91.5 1e-13 seq98 91.5 1e-13 >seq260794 Length=213 Score = 102 bits (112), Expect = 8e-17 Identities = 105/135 (78%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| || | ||| | ||| | ||||||||||| || ||||| |||||| | Sbjct 32 CCACCACGTAGTCGGAGAACCAGGTGGAGAGTAGACTCTTTCTGGATGTTGTAATCGGAC 91 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || | |||||||| ||||| |||||| ||||||| || |||||||| || || Sbjct 92 AAAGTGCGTCCA-TCTTCGAGTTGTTTGCCAGCAAAGATCAGTCGCTGCTGATCTGGGGG 150 Query 139657 TATGCCTTCTTTGTC 139671 || ||||||||||| Sbjct 151 GATTCCTTCTTTGTC 165 >seq103000 Length=415 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | ||| | ||||| || || ||||| || || || ||||| Sbjct 177 CCTCCTCGAAGACGGAGAACAAGGTGAAGAGTTGATTCTTTCTGGATATTGTAATCAGAA 236 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || | ||||| | ||| || || ||| |||| || ||||||||||| || || Sbjct 237 AGAGTGCGTCCA-TCTTCCAACTGCTTTCCGGCAAAGATTAGCCGTTGCTGATCCGGTGG 295 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||||||||| ||| | |||| || | | ||| | ||||||| || ||| | Sbjct 296 GATTCCTTCTTTGTC-TTGAATCTTTGCCTTCACATTTTCAATGGTGTCGGAGGCCTCAA 354 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | || || ||||| | ||||| || || || ||||| Sbjct 355 CCTCGAGTGTAATTGTTTTCCCGGTTAGGGTTTTCACAAAGATCTGCAT 403 >seq83363 Length=456 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | ||| | || | || || || ||||| ||||| || || Sbjct 399 CCTCCTCGGAGACGGAGAACAAGATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAG 340 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| |||||||| || ||| |||| ||||| |||||||| || || Sbjct 339 AGGGTACGTCCA-TCTTCAAGCTGTTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGG 281 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCA 139715 || ||||| ||||| ||| |||| | || | | || | ||| || | || |||| Sbjct 280 AATTCCTTCCTTGTCT-TGAATTTTCGCCTTCACATTCTCGATTGTATCAGAGGCTTCCA 222 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | || | ||||| || ||||| ||||||||||| |||||||| Sbjct 221 CTTCCAAAGTGATGGTCTTCCCCGTCAAGGTTTTTACGAAAATTTGCAT 173 >seq182 Length=3864254 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| ||||| | |||| ||||| ||||| || || Sbjct 2229825 GTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 2229766 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || | ||||| || ||||| |||||||| || || ||| || || Sbjct 2229765 GCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 2229706 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| ||||||||||||| | ||| | ||||||||||||| || Sbjct 2229705 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 2229646 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 2229645 TTCACGAAGATCTGCATA 2229628 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| |||||| | |||| ||||| ||||| || || Sbjct 2229597 GTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 2229538 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || | ||||| || || || |||||||| || || ||| || || Sbjct 2229537 GCGAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 2229478 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | |||||||| ||||| || Sbjct 2229477 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTC 2229418 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 2229417 TTCACGAAGATCTGCAT 2229401 >seq98 Length=6767347 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| |||||||| |||||| |||||| | ||||| || || || ||||| ||||| Sbjct 4449256 TCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTT 4449197 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | ||| | ||||| ||||||||||||| | ||| | Sbjct 4449196 TCTTGGATCTTCCCCTTGACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 4449137 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || ||||| || || ||||| || ||||| Sbjct 4449136 GTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 4449102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494348083620000