Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4 138 2e-27 seq39 125 1e-23 seq149 104 3e-17 >seq4 Length=22931326 Score = 138 bits (152), Expect = 2e-27 Identities = 106/126 (84%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| ||||| ||||| |||||||| ||||| || ||||| || || ||||| | Sbjct 4287783 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCT 4287724 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || || ||||| || |||||||||||||||||||| ||||| ||||||| Sbjct 4287723 TGAGCCAGAAGATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCCGCAAAGG 4287664 Query 50102 CAACAA 50107 | |||| Sbjct 4287663 CTACAA 4287658 Score = 96.9 bits (106), Expect = 5e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||||| || ||||| || | |||||||||||||| ||||| |||||||| ||||| Sbjct 4285510 ATCTTTAATGTAGGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 4285451 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || || || || |||||||| | || || |||||||| |||||| Sbjct 4285450 AATTTGGAAGCCATAGAAACAACGGGCTTCTGTAATCTGAACTTCT 4285405 Score = 93.3 bits (102), Expect = 6e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||||| || || || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 4284734 ATCTTTAATGTAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 4284675 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || || || || |||||||| | || || |||||||| |||||| Sbjct 4284674 AATTTGGAAGCCATAGAAACAACGGGCTTCTGTAATCTGAACTTCT 4284629 >seq39 Length=12483156 Score = 125 bits (138), Expect = 1e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| || ||||| || |||||||| || ||||| | Sbjct 4319058 ACCTGAAATTCTCCTGACAAGACTCTGCGGGTGTAGATGTTACTGGTGTAAGGTTCAATT 4318999 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || ||||||||||||||||| ||||||||||| || || ||||| || || | | |||| Sbjct 4318998 GACTCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 4318939 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 4318938 CTGTTTCTTATACCATA 4318922 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| ||||||||||| || | || || || |||| | ||| Sbjct 4310635 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 4310576 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| || ||| | | || || ||||||| || Sbjct 4310575 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 4310516 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 4310515 TCCAGGTAAATTGC 4310502 Score = 87.8 bits (96), Expect = 3e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || |||||||| || || | || | ||| | ||||| || || || || ||||| ||| Sbjct 4315139 TACGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCATAA 4315080 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 ||||||||||| || || | |||||| | || || || | || ||||| || || Sbjct 4315079 TAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGTAT 4315020 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 4315019 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGCGT 4314960 Query 79480 TTATTAGA 79487 ||||| || Sbjct 4314959 TTATTTGA 4314952 >seq149 Length=4484336 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || ||||| |||||||| ||||| || ||||| || || | ||| || Sbjct 2319665 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCTTC 2319606 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||||||||| | ||||| || || || ||||| |||||||| || || |||||||| Sbjct 2319605 AGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGGCC 2319546 Query 50104 AC 50105 || Sbjct 2319545 AC 2319544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715784263329000