Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq260794 84.2 2e-11 seq103000 84.2 2e-11 >seq260794 Length=213 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| |||| | |||| |||| ||| ||| || || | |||||||||||| Sbjct 32 CCACCACGTAGTCGGAGAACCAGGTGGAGAGTAGACTCTTTCTGGATGTTGTAATCGGAC 91 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || ||| | || || | ||||||||| ||||| |||| |||||| ||||| | || Sbjct 92 AAAGTGCGTCCATCTTCGAGTTGTTTGCCAGCAAAGATCAGTCGCTGCTGATCTGGGGGG 151 Query 43003 ACACCTTCTTTTTC 43016 | |||||||| || Sbjct 152 ATTCCTTCTTTGTC 165 >seq103000 Length=415 Score = 84.2 bits (92), Expect = 2e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 42937 TCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCG 42996 ||||| | ||||| |||| || | ||| |||||||||||||| | |||||| ||||| Sbjct 3 TCGGAAAGGGTACGGCCGTCTTCTAGTTGCTTGCCGGCAAAAATAAGTCGCTGCTGATCT 62 Query 42997 GCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCC 43056 | || | ||||| || || || |||| || | | | |||||| ||| Sbjct 63 GGTGGGATTCCTTCCTTGTCTTGAATTTTGGCTTTCACATTCTCGATTGTGTCTGAGGCC 122 Query 43057 TCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 ||||| || | || || |||||||| || ||||| |||||||| || |||||| Sbjct 123 TCGACTTCAAGAGTGATTGTTTTTCCAGTCAGAGTCTTCACAAAGATCTGCATT 176 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || || || | ||||||||| || | || ||| | || ||||| || || |||||||| Sbjct 213 TCTTTCTGGATATTGTAATCAGAAAGAGTGCGTCCATCTTCCAACTGCTTTCCGGCAAAG 272 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || | || || ||||| | || | |||||||| || ||| | || || | Sbjct 273 ATTAGCCGTTGCTGATCCGGTGGGATTCCTTCTTTGTCTTGAATCTTTGCCTTCACATTT 332 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| |||||| ||||| || || | || || ||||| |||||||| ||||||||| Sbjct 333 TCAATGGTGTCGGAGGCCTCAACCTCGAGTGTAATTGTTTTCCCGGTTAGGGTTTTCACA 392 Query 43099 AAAATTTGCAT 43109 || || ||||| Sbjct 393 AAGATCTGCAT 403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380083398250050