Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq83363 116 4e-21 seq260794 102 8e-17 seq103000 89.7 5e-13 >seq83363 Length=456 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | ||| | ||| | ||| | || ||||| ||||| |||||||| || Sbjct 399 CCTCCTCGGAGACGGAGAACAAGATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAG 340 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| || ||||| || ||| |||| ||||| |||||||| || || Sbjct 339 AGGGTACGTCCA-TCTTCAAGCTGTTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGG 281 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| |||||| || | | || | || || | || ||| || Sbjct 280 AATTCCTTCCTTGTCTTGAATTTTCGCCTTCACATTCTCGATTGTATCAGAGGCTTCCAC 221 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | ||| | ||||| || ||||| ||||||||||| |||||||| Sbjct 220 TTCCAAAGTGATGGTCTTCCCCGTCAAGGTTTTTACGAAAATTTGCAT 173 >seq260794 Length=213 Score = 102 bits (112), Expect = 8e-17 Identities = 87/105 (83%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 143046 ||||| ||||| || |||||||||||| || |||| || | |||||||||||||| || Sbjct 62 GTAGACTCTTTCTGGATGTTGTAATCGGACAAAGTGCGTCCA-TCTTCGAGTTGTTTGCC 120 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 |||| ||||||| || |||||||| || || || ||||||||||| Sbjct 121 AGCAAAGATCAGTCGCTGCTGATCTGGGGGGATTCCTTCTTTGTC 165 >seq103000 Length=415 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | ||| | ||| | |||| || |||||||| || || |||||||| Sbjct 177 CCTCCTCGAAGACGGAGAACAAGGTGAAGAGTTGATTCTTTCTGGATATTGTAATCAGAA 236 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | ||||| | || || || ||| |||| || ||||||||||| || || Sbjct 237 AGAGTGCGTCCA-TCTTCCAACTGCTTTCCGGCAAAGATTAGCCGTTGCTGATCCGGTGG 295 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| ||| ||| || | | ||| | ||||| | || || || Sbjct 296 GATTCCTTCTTTGTCTTGAATCTTTGCCTTCACATTTTCAATGGTGTCGGAGGCCTCAAC 355 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || ||||| | ||||| || || || ||||| Sbjct 356 CTCGAGTGTAATTGTTTTCCCGGTTAGGGTTTTCACAAAGATCTGCAT 403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505260605502000