Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq240 125 1e-23 seq31306 118 2e-21 >seq240 Length=2402814 Score = 125 bits (138), Expect = 1e-23 Identities = 349/529 (66%), Gaps = 10/529 (2%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || ||||| || || || ||||| || ||||||||||| | || || | || ||| Sbjct 1019888 GGAGATCTAGGCCCGGTTTACGGCTTTCAGTGGAGGCATTTTGGGGCCGAATACAAAGAT 1019947 Query 70127 TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTC 70186 || |||| ||||| || | || || || || |||||| | | |||||| || Sbjct 1019948 ATGGATTCAGATTATTCAGGCGAAGGAGTAGACCAGCTGCAGAAGGTGACTGACACAATC 1020007 Query 70187 AAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCAC 70246 || ||||| || | || || | || | ||||| | |||||||| |||| | Sbjct 1020008 AAAACCAACCCTAATGACAGAATCGTCATCATGTGTGCCTGGAATCCAAAAGATCTCGCG 1020067 Query 70247 CAAATGGCACTACCACCGTGTCACTGT--TTGGCTCAGTTTTAC-TCGT--ACGATGGCA 70301 | | ||| || ||||| || | ||| || || ||||| ||| | || ||| || Sbjct 1020068 CTCACGGCCCTCCCACCCTGCC-CTGCCCTTTGC-CAGTTCTACGTGGTGAACGGTG--- 1020122 Query 70302 AATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACA 70361 | |||| ||| |||| || || | ||||||||||| || | ||||| |||| Sbjct 1020123 AGCTGTCCTGCCAGCTGTACGAGTGGTCGGGAGACATGGGCCTGGGCATGCCCTTCAACA 1020182 Query 70362 TTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACG 70421 | || ||||| || || | || |||||||||| ||||| || |||||||| | | Sbjct 1020183 TCGCCAGCTACTCCCTGCTCACCTACATGATTGCACACATCACAGGCCTGAAGCCAGGTG 1020242 Query 70422 AGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGG 70481 | || |||||||| | || || || ||| | || | |||||||| ||||| | || Sbjct 1020243 ACTTTGTACACACTTTGGGAGATGCCCACATTTACATGAATCACATTGAGCCGCTGAAAA 1020302 Query 70482 TGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGAAA 70541 |||| || | || || || || ||||| | ||||| | | || |||||||| | Sbjct 1020303 TGCAGCTTCAGCGAGAACCAAGGCCTTTCCTGAAGCTCAAAATCCTTCAAAAAGTTGAGA 1020362 Query 70542 ATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCC 70590 | ||||| || ||| ||||| ||| || |||| ||| |||| Sbjct 1020363 AAATTGATGACTTCAAGGCTGAAGACTTTCAGATTGAAGGCTACAATCC 1020411 >seq31306 Length=675 Score = 118 bits (130), Expect = 2e-21 Identities = 364/562 (65%), Gaps = 26/562 (5%) Strand=Plus/Plus Query 127150 GTTGTAGTGGTCACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATC 127209 || || || || ||||||||| ||| ||||| || ||||| | | || | | Sbjct 3 GTGGTTGTTGTGACAATGTCAGCATATTCAAATGGTGACGGAATCAGGCCAGCGGCTACC 62 Query 127210 AAGCCCGCAATGTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCT 127269 || || | |||||| || || || |||||||| | | || ||||| || | | Sbjct 63 AATCCAGAAATGTGAGCCATGTCTGCCATCAGATATGCCCCACACTTGTCGGCGATTTTT 122 Query 127270 CGGAATCGTCTATAGTCCAAGCGCCGAGGATAGCA----ACTGGTGCCGGCTATGATTAG 127325 |||||||| |||||||||| | || | |||||| ||| || || | | | Sbjct 123 CGGAATCGAGCATAGTCCAAGTGACGCGCATAGCAGGACACT----CCTGCGACCAAAAC 178 Query 127326 CCTAGGTTTGAATAGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTG 127385 | ||||| |||| || | || |||| | | | ||||||| | | ||||| Sbjct 179 CTTAGGTCTGAACAGCATCGCGTTCTCCTCCATGCGGTCATAGTCAATCAAGCCAGTGGT 238 Query 127386 AGGATCCACCTTGTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT----GC 127441 |||||||||||||| ||||| | |||||||| |||||| || || || || || Sbjct 239 GGGATCCACCTTGTAGGGCATTGACTGGAAAAAGATTGATGTTGCTGATACTTTTCTAGC 298 Query 127442 G--------GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCT 127493 | |||||| || | |||||||| || || || || || || |||||||| | Sbjct 299 GGGAGTGAAGAATCCATGAGAAAGGTGGCCACCATCTGGAAGGTCAAGCCCCATGATACG 358 Query 127494 ACCGTGCGGTTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGG 127553 || | |||| ||||| | || || |||||||| ||||| || || ||| ||| Sbjct 359 GCCATTAGGTTCTACGATAGCTGTATATACGGCAAAATTGGCAGGAGACCCAGAGAGCGG 418 Query 127554 TTGTACACACACTCCCCA---TTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTG 127610 || || ||| ||||| ||||| || |||| || || ||| || | Sbjct 419 CTGCACGTTCACACCCCACAGTTCGGGATC---CAAACCAAAGACTTCAAGAGCTCTTTT 475 Query 127611 CTGTGCTAGCAGTTCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGG 127670 ||| | |||||| || | || || |||||||||||||| || || | || || Sbjct 476 CTGGCACAACAGTTCCATCTGGTCAATGAACTCGTTACCACCGTAATACCTTGCACCTGG 535 Query 127671 CCTACCCTCCGAGTACTTGTTG 127692 |||||| |||||||||||| Sbjct 536 GTAACCCTCAGAGTACTTGTTG 557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 738495829911000