Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq83363 91.5 1e-13 seq103000 86.0 5e-12 >seq83363 Length=456 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| ||||| || || ||||| |||||||| || || | | | ||||| Sbjct 382 AACAAGATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGTCCATCTTC 323 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||| || || | || | ||| || || || |||||||||||| ||||| Sbjct 322 AAGCTGTTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTG 263 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| ||| ||| | || || ||||| ||| || || || || ||||| || Sbjct 262 AATTTTCGCCTTCACATTCTCGATTGTATCAGAGGCTTCCACTTCCAAAGTGATGGTCTT 203 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| |||||||| ||||||||||| Sbjct 202 CCCCGTCAAGGTTTTTACGAAAATTTGCAT 173 Score = 82.4 bits (90), Expect = 6e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| || || ||||| ||||| |||||| || | | | | ||||| | ||| Sbjct 147 TGAAGGGTTGACTCCTTTTGAATGTTATAATCGGAGAGTGTACGCCCATCTTCAAGTTGC 88 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT- 15279 || || ||| | || | ||| ||||| || |||||||||||| ||||| |||||| Sbjct 87 TTTCCTGCGAAAATAAGACGCTGTTGATCAGGTGGAATTCCTTCCTTGTCCTGAATTTTC 28 Query 15280 GCTCTTTACAATTTCTATGGTATC 15303 ||| || ||| | || |||||||| Sbjct 27 GCT-TTCACATTCTCAATGGTATC 5 >seq103000 Length=415 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || ||||| || || |||||||| ||| | | | ||||| || || Sbjct 201 TGAAGAGTTGATTCTTTCTGGATATTGTAATCAGAAAGAGTGCGTCCATCTTCCAACTGC 260 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || || || | || | ||||| || || ||| |||||||||||||| ||| ||| Sbjct 261 TTTCCGGCAAAGATTAGCCGTTGCTGATCCGGTGGGATTCCTTCTTTGTCTTGAATCTTT 320 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| ||| |||| ||||| ||| || || || | ||||| ||||| || || Sbjct 321 GC-CTTCACATTTTCAATGGTGTCGGAGGCCTCAACCTCGAGTGTAATTGTTTTCCCGGT 379 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| ||||| || ||||| Sbjct 380 TAGGGTTTTCACAAAGATCTGCAT 403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360957719523225