Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq103000 167 5e-36 seq150 136 9e-27 seq182 129 1e-24 seq260794 113 1e-19 seq83363 113 1e-19 seq103970 105 2e-17 seq191 104 5e-17 seq584 96.9 8e-15 seq4 89.7 1e-12 >seq103000 Length=415 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | || || || || | || ||||||||||| ||||| || ||| Sbjct 174 ATTCCTCCTCGAAGACGGAGAACAAGGTGAAGAGTTGATTCTTTCTGGATATTGTAATCA 233 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| | || ||||| ||||| ||||||| || ||||| || Sbjct 234 GAAAGAGTGCGTCCATCTTCCAACTGCTTTCCGGCAAAGATTAGCCGTTGCTGATCCGGT 293 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| || ||||||||||| || |||||||| | ||| ||| | || Sbjct 294 GGGATTCCTTCTTTGTCTTGAATCTTTGCCTTCACATTTTCAATGGTGTCGGAGGCCTCA 353 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| |||||||| || || || || || ||||| ||||| |||||||| Sbjct 354 ACCTCGAGTGTAATTGTTTTCCCGGTTAGGGTTTTCACAAAGATCTGCAT 403 Score = 111 bits (122), Expect = 4e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 104385 AGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGAT 104444 |||| || || || | |||||||||||||| || || |||||||| || | ||| |||| Sbjct 1 AGTCGGAAAGGGTACGGCCGTCTTCTAGTTGCTTGCCGGCAAAAATAAGTCGCTGCTGAT 60 Query 104445 CAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAG 104504 | || || |||||||| || || ||||| || ||||| ||||| || | || || | Sbjct 61 CTGGTGGGATTCCTTCCTTGTCTTGAATTTTGGCTTTCACATTCTCGATTGTGTCTGAGG 120 Query 104505 GTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || || || || ||||| || || || ||||| ||||||||| Sbjct 121 CCTCGACTTCAAGAGTGATTGTTTTTCCAGTCAGAGTCTTCACAAAGATCTGCATT 176 >seq150 Length=4498840 Score = 136 bits (150), Expect = 9e-27 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||||||||| ||||| || ||||| | || || ||||| ||||| || Sbjct 34211 GTGGACTCCTTCTGAATATTGTAGTCTGACAGAGTGCGGCCATCCTCTAGCTGTTTGCCC 34270 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||||| || | ||| |||||||| || || || || || || || || || ||||| Sbjct 34271 ACAAAAATCAGACACTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGGATTTTAGCTTTG 34330 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || || ||||| || || || ||||| || || || || Sbjct 34331 ACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTC 34390 Query 104543 TTTACAAATATCTGCAT-TTTGTGT 104566 || ||||| |||||||| | ||||| Sbjct 34391 TTCACAAAGATCTGCATCTCTGTGT 34415 >seq182 Length=3864254 Score = 129 bits (142), Expect = 1e-24 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || || || ||||| || || || || Sbjct 2229630 ATACCACCCCTCAGACGCAGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCG 2229571 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| || || || || || || || |||||||| || ||||| Sbjct 2229570 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGG 2229511 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| |||||||| ||||| || || || || || | ||| || || || || Sbjct 2229510 GGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCC 2229451 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||| || || | || || || || |||||||||||| Sbjct 2229450 ACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTTG 2229397 >seq260794 Length=213 Score = 113 bits (124), Expect = 1e-19 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | ||| | || || || || | ||||| |||||||| || || || || Sbjct 29 ATTCCACCACGTAGTCGGAGAACCAGGTGGAGAGTAGACTCTTTCTGGATGTTGTAATCG 88 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||| | || ||||| |||||||| |||||||| || || | ||| ||||| || Sbjct 89 GACAAAGTGCGTCCATCTTCGAGTTGTTTGCCAGCAAAGATCAGTCGCTGCTGATCTGGG 148 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC 104499 || ||||||||||| ||||| ||||| || || || ||||| | ||| || Sbjct 149 GGGATTCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTC 198 >seq83363 Length=456 Score = 113 bits (124), Expect = 1e-19 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || || || | || || || || ||||| ||||| || Sbjct 174 ATGCCTCCTCGAAGACGGAGCACAAGGTGAAGGGTTGACTCCTTTTGAATGTTATAATCG 115 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| ||||| ||||| || ||||| || | |||||||||||| Sbjct 114 GAGAGTGTACGCCCATCTTCAAGTTGCTTTCCTGCGAAAATAAGACGCTGTTGATCAGGT 55 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC 104499 || |||||||| || |||||||| || ||||| ||||| || | |||||| Sbjct 54 GGAATTCCTTCCTTGTCCTGAATTTTCGCTTTCACATTCTCAATGGTATC 5 >seq103970 Length=412 Score = 105 bits (116), Expect = 2e-17 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || || || | || || || ||||| || || || || Sbjct 198 ATTCCTCCACGAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCG 139 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||| || || || | ||| ||||| || || || || | ||| ||||||||| Sbjct 138 GACAGAGTTCGGCCATCCTCCAATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGA 79 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| |||||||||||||| || || ||||| || | ||| || | || Sbjct 78 GGGATTCCTTCCTTATCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCAGAGGCCTCA 19 Query 104510 ACCTCTAGTGTAATAGTC 104527 ||||| || || || ||| Sbjct 18 ACCTCGAGAGTGATGGTC 1 >seq191 Length=3465010 Score = 104 bits (114), Expect = 5e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | || ||||| ||||| || || | || || | || |||||||| | Sbjct 1562678 TGGTGGTACTTCATATCTAAGGGAATTGAGTATTTGGACACAGTGTTTTTCATCCTGAGG 1562619 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| || ||| | ||| || |||||||||||||| | ||| |||||||| ||| Sbjct 1562618 AAGAAAAACAACCAAGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACATTG 1562559 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 | ||||| || ||||| ||| ||||||| ||||| Sbjct 1562558 TGGTGGATTGGAATTAAGTGGGTCGCAGGGGGACA 1562524 >seq584 Length=118070 Score = 96.9 bits (106), Expect = 8e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || || || ||||||||||| ||||| ||| |||| || || || || ||| Sbjct 48993 TGCAAGGTGGACTCATTCTGAATATTGTAGTCTGATGGAGTGTGGCCATCCTCCAGCTGT 49052 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || | ||||||| || ||| || ||||| || || || || || || || || || Sbjct 49053 TTGCTCACAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTTA 49112 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 |||| ||||| || | | | || || || | ||||| || || || ||||| || | Sbjct 49113 ACTTTGACATTCTCAATGATGTCACTGGGCTTAACCTCAAGGGTGATGGTCTTGCCTATC 49172 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| |||||||| Sbjct 49173 AGGGTCTTCACAAAGATCTGCAT 49195 >seq4 Length=22931326 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551 || |||||||| ||| |||||||||||||| ||| | ||||| ||| |||| ||||| Sbjct 4289031 GTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTT 4289090 Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATT 269611 |||||| | ||| | | ||||||| ||||| || ||||| | | | ||| ||| | Sbjct 4289091 GAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATGTCCAGTCCAACAGAGAATTCT 4289150 Query 269612 TTCACTACAGATGCAGAATTCTAA 269635 || || ||||| || |||||| Sbjct 4289151 TTTACCTTGGATGCTGACTTCTAA 4289174 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/103 (79%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 65757 CCTTTACATATATTAAACTCCTCCTTACCGAAATTAAATATTAATATTCCAACATTACCT 65816 ||||| || || ||||||| || || || |||||||||| | | |||||||| ||| Sbjct 13631187 CCTTTTCAAAT-TTAAACTTTTCTTTGCCAAAATTAAATAGTGCAACACCAACATTTCCT 13631245 Query 65817 CTATAGTCTGAATCTATAACACCAGCACCTACATCTATAAAGT 65859 || || ||| |||||| |||||||| ||||||||||| |||| Sbjct 13631246 CTGTAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGT 13631288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147316071996300