Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq240 251 5e-62 seq49 109 4e-19 >seq240 Length=2402814 Score = 251 bits (278), Expect = 5e-62 Identities = 399/569 (70%), Gaps = 5/569 (1%) Strand=Plus/Minus Query 25389 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAG 25448 ||||||| || || || | || ||||| | |||||||| || | ||||| || ||| Sbjct 1020332 GGAAAGGC-CTTGGTTCTCGCTGAAGCTGCATTTTCAGCGGCTCAATGTGATTCATGTAA 1020274 Query 25449 ACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCC 25508 | ||| || ||||||| |||||| ||||| || || || | || || || | || || Sbjct 1020273 ATGTGGGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCTGTGATGTGTGCA 1020214 Query 25509 ATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCC 25568 |||||||| ||||| || |||||||||||||||| ||||| | || | ||||||| | Sbjct 1020213 ATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGCATGCCCAGGCCCATGT-C 1020155 Query 25569 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACAT 25628 ||||||| || ||| ||||| || || ||||| ||| |||||| ||||| || | Sbjct 1020154 TCCCGACCACTCGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAAG 1020095 Query 25629 GGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGAT 25688 || ||| || || || || | || | | ||||| || |||||||| |||| ||| Sbjct 1020094 GGCAGGGCAGGGTGGGAGGGCCGTGAGCGCGAGATCTTTTGGATTCCAGGCACACATGAT 1020035 Query 25689 GATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCCAC 25748 || | ||||| | |||||| |||| || | || |||||||| || || Sbjct 1020034 GACGATTCTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCACCTTCTGCAGCTGGTCTAC 1019975 Query 25749 CCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTG 25808 || || || || |||| ||| || |||| || || || |||| ||||||||| Sbjct 1019974 TCCTTCGCCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCACTG 1019915 Query 25809 GAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAA 25868 || ||||| ||||| ||||| |||| || | ||| || ||| | ||||| Sbjct 1019914 AAAGCCGTAAACCGGGCCTAGATCTC---CTGCTCTGGTGGAGAATCCCAGGCTGTCCAA 1019858 Query 25869 AAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGA 25928 ||||||| ||| ||| ||||||||||||| || || ||||| || ||||| || | Sbjct 1019857 GAAGTCTCGGGACCCACTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGC 1019798 Query 25929 GTTTGTGGACCCTCTGACGAACCACAGCA 25957 ||||||||| || ||| |||||||||| Sbjct 1019797 GTTTGTGGATCCCTTGATAAACCACAGCA 1019769 >seq49 Length=11369404 Score = 109 bits (120), Expect = 4e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| || || || |||| |||||| || || ||||| ||||| ||||| || Sbjct 7918387 CATATCTTTGTATTCGGCCCCAAAATGCCTCCATTGAAAGCCGTAAACCGGGCCTAGATC 7918328 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 ||| ||||| ||| || ||| | ||||| ||||||| ||| ||||||||||| Sbjct 7918327 TCCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCGTC 7918268 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||||| || || ||||| || ||||| || | ||||||||| || Sbjct 7918267 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 7918220 Score = 100 bits (110), Expect = 2e-16 Identities = 113/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || | |||||||||||||| ||||| || || | |||||| Sbjct 7921579 GCGATCATGTAGGTGAGCAGGGAATAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATG 7921520 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | ||||||| |||||| ||||| || || ||||| ||| |||||| ||||| || Sbjct 7921519 T-CTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCA 7921461 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | || || ||| || || || || || || Sbjct 7921460 AAGGGCGTGGCAGGGCGGGAGGGCCATGAG 7921431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338990456713425