Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1040 89.7 3e-13 seq211 86.0 3e-12 seq405 84.2 1e-11 seq314 84.2 1e-11 seq91 82.4 4e-11 >seq1040 Length=15376 Score = 89.7 bits (98), Expect = 3e-13 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 12982 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 12923 Query 11528 CCGTCGACGATTG 11540 || ||| ||| || Sbjct 12922 CCCTCGGCGAGTG 12910 >seq211 Length=2993106 Score = 86.0 bits (94), Expect = 3e-12 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| |||||| | |||||||||| ||||||| ||||||||||||| ||||||| || Sbjct 167538 AAAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAAC 167479 Query 11512 CAACTGAGCTAATGGGCCGTCGA 11534 |||||||||||| |||| |||| Sbjct 167478 CAACTGAGCTAACCGGCC-TCGA 167457 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 3873 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 3932 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 3933 CTGAGCTAACCGGCC 3947 Score = 84.2 bits (92), Expect = 1e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| || Sbjct 164121 AACTTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAAC 164062 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 164061 CAACTGAGCTAACCGGCC 164044 >seq405 Length=545696 Score = 84.2 bits (92), Expect = 1e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 11450 TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTR 11509 || || |||||| | |||||||||| ||||||| ||||||||||||| ||||||| Sbjct 35877 TCTAAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTA 35818 Query 11510 ACCAACTGAGCTAATGGGCCGTC 11532 |||||||||||||| |||| || Sbjct 35817 ACCAACTGAGCTAACCGGCCATC 35795 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 185239 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 185298 Query 11528 CC 11529 || Sbjct 185299 CC 185300 >seq314 Length=1336125 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 1138148 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 1138089 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 1138088 CTGAGCTAACCGGCC 1138074 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1168104 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1168163 Query 11528 CC 11529 || Sbjct 1168164 CC 1168165 >seq91 Length=6896314 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 6325685 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 6325626 Query 11528 CC 11529 || Sbjct 6325625 CC 6325624 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260609298456100