Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq14 161 1e-34 seq53 87.8 3e-12 >seq14 Length=17206968 Score = 161 bits (178), Expect = 1e-34 Identities = 170/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| | || ||| |||||||||||| || | ||||| ||||| |||||| Sbjct 6320914 GTCTGGAACAACCGCTCATCATCCCATTCTGGATGCTCCTGCTTCAGCACATCACACACT 6320855 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||||||||||| |||||||| || ||||||||||| |||||||||||||| ||||| Sbjct 6320854 CTGTTGTGTTCCCGCAGCCAGATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 6320795 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 ||| || || ||||| | ||| | ||| || || | ||||| |||||||| | Sbjct 6320794 AGCTCCTGCCCCACAGCAAACTGCAGGTGTTCAGGAACATGAGGAGGGTAGATCATCTCG 6320735 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857 ||||| ||||||||| | || ||||||| || || |||| Sbjct 6320734 ACCTGAGTATCTTTGACTGTTGGAGGATACACCTCTCCACCAAT 6320691 Score = 116 bits (128), Expect = 5e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||| ||||| || || |||||| ||| ||| | || Sbjct 6319816 TCTTACCCCATGGTTCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 6319757 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 6319756 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 6319697 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 || |||| | || | ||||| |||||||||||| | | | ||| || || | Sbjct 6319696 AGGGATGAACTTTCTTCTCAGAAGTAATTTTTCCACAACTTCTTTTGAATCAGGAAGCTC 6319637 Query 10208 ttttttACCTGGTGAACGAGAA 10229 ||| | |||| || ||||| Sbjct 6319636 TTTCCTCCCTGAAAAATGAGAA 6319615 Score = 96.9 bits (106), Expect = 5e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | || ||||| || |||| || || ||||| ||| |||| Sbjct 6319300 TCACCTTTCACACCCATGGGTGTTGGGCAGTCGTCAGCCACAGGAGGAAGAGCTCTTGTA 6319241 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 |||||||||||||| || || |||||||||||| || | |||| || || || | Sbjct 6319240 TAATAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTGTGCATTATAAGTT 6319181 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || ||||||||||||| || ||||| ||||| Sbjct 6319180 GGTGGGCTGTCAATCAGATTTGATCTTGCTGAA 6319148 >seq53 Length=10547686 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/141 (74%), Gaps = 4/141 (3%) Strand=Plus/Plus Query 10026 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 10083 || || ||||| || |||| | | || |||||| | || || || |||| | ||| Sbjct 7158753 GTACTCACCCCGTGGCCCAATGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTT 7158810 Query 10084 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 10143 | || |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| |||| Sbjct 7158811 TGAAGAACTGGTGTGTGAAGTGTTGCGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGGG 7158870 Query 10144 GATCGGGAGTGAAGGTCCTCC 10164 | || || |||| |||||| Sbjct 7158871 GGTCAGGTATGAACTTCCTCC 7158891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 706073968434000