Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq103000 116 3e-21 seq83363 96.9 3e-15 seq182 95.1 1e-14 seq150 95.1 1e-14 seq299 93.3 4e-14 seq98 87.8 2e-12 seq260794 82.4 7e-11 >seq103000 Length=415 Score = 116 bits (128), Expect = 3e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || |||||||| | || | || | ||| | ||| ||||| || || | || ||||| Sbjct 173 CATTCCTCCTCGAAGACGGAGAACAAGGTGAAGAGTTGATTCTTTCTGGATATTGTAATC 232 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | |||| ||| |||| ||| |||||| ||||||||| | ||||||||| || Sbjct 233 AGAAAGAGTGCGTCCATCTTCCAACTGCTTTCCGGCAAAGATTAGCCGTTGCTGATCCGG 292 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 || || ||||||||||| | ||| |||||||| || | | ||||| | | || Sbjct 293 TGGGATTCCTTCTTTGTCTTGAATCTTTGCCTTCACATTTTCAATGGTGTCGGAGGCCTC 352 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 || || | || || ||||| || || || ||||||||||||||||||||||| Sbjct 353 AACCTCGAGTGTAATTGTTTTCCCGGTTAGGGTTTTCACAAAGATCTGCATGCT 406 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || || || || ||| |||| || | || ||||||||||| || || ||||| ||| Sbjct 21 TCTTCTAGTTGCTTGCCGGCAAAAATAAGTCGCTGCTGATCTGGTGGGATTCCTTCCTTG 80 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| || || || ||| ||||| | | ||||| |||| ||||| Sbjct 81 TCTTGAATTTTGGCTTTCACATTCTCGATTGTGTCTGAGGCCTCGACTTCAAGAGTGATT 140 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||||||| ||||| ||||||||||||||||| Sbjct 141 GTTTTTCCAGTCAGAGTCTTCACAAAGATCTGCAT 175 >seq83363 Length=456 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/239 (69%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||||| | || | || | || | || ||||||||||| | ||| | Sbjct 407 TTTGCATTCCTCCTCGGAGACGGAGAACAAGATGGAGGGTTGATTCCTTTTGGATGTTGT 348 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | || | || || | ||| || |||||||||||| ||||||| | | ||||| Sbjct 347 AGTCAG--AGAGGGTACGTCCATCTTCAAGCTGTTTTCCGGCAAAGATGAGACGCTGCTG 290 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 |||||| ||||| ||||| ||||| | |||||| ||||| || ||| || |||| Sbjct 289 ATCTGGTGGAATTCCTTCCTTGTCTTGAATTTTCGCCTTCACATTCTCGATTGTATCAGA 230 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || || | |||||||| || || || | ||||| || || || ||||||| Sbjct 229 GGCTTCCACTTCCAAAGTGATGGTCTTCCCCGTCAAGGTTTTTACGAAAATTTGCATGC 171 >seq182 Length=3864254 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| |||| |||| || || ||||| || | ||| |||||| Sbjct 2229627 CCACCCCTCAGACGCAGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGGAA 2229568 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || || | ||||| | || ||||| || || || Sbjct 2229567 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGGGGG 2229508 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | || || ||||| ||| ||| |||||| | | || || Sbjct 2229507 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 2229448 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || | || ||||| ||||||||||| Sbjct 2229447 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2229401 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| || | |||| |||| || || ||||| || | ||| ||||| Sbjct 2229855 CCACCCCTCAGACGGAGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAA 2229796 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || || | ||||| | || ||||| || ||||| Sbjct 2229795 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGG 2229736 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | || || ||||| ||| ||| ||||| | | || || Sbjct 2229735 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACC 2229676 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 2229675 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2229629 >seq150 Length=4498840 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| ||||||| || || ||||| || | || || || || |||| | |||||| Sbjct 34198 CACTAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGACAGAGTGCGGCCATCCTC 34257 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||||| || |||| || | | |||||||| || || || || || ||||| | Sbjct 34258 TAGCTGTTTGCCCACAAAAATCAGACACTGCTGATCAGGTGGGATGCCCTCCTTGTCTTG 34317 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||| || ||||| | | |||||| | | || || || | |||||||| || Sbjct 34318 GATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTT 34377 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||||||||||||||| Sbjct 34378 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 34407 >seq299 Length=1488728 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 ||| || ||||| || || |||| |||||||||| ||| |||||||| || | ||| || Sbjct 453095 TTAGACACCTCCCCTTAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTA 453154 Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 || || ||| ||| ||||||||||| || ||||||| || || ||||| || Sbjct 453155 GTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTC 453214 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953 |||| | || || ||||| || | || | ||||||| ||| |||||| | | Sbjct 453215 TGGAAGGATGCCCTCTTTTTCTTGGATCGTCCCCTTGACATTTTCGATGGTGTCACTGGG 453274 Query 94954 GTCGACGTCAATCGTGATGGTTTT 94977 || || || | |||||||| || Sbjct 453275 CTCCACCTCCAGGGTGATGGTCTT 453298 >seq98 Length=6767347 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||||||||| || ||||||| || || ||||| ||||| || || || ||||| Sbjct 4449257 ATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTT 4449198 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||||| ||| |||||| | | || || || | ||||| Sbjct 4449197 TTCTTGGATCTTCCCCTTGACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT 4449138 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || || | || ||||| ||||||||||| Sbjct 4449137 GGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 4449102 >seq260794 Length=213 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||| | |||||| || || || | ||| |||||| || |||| ||| || Sbjct 50 ACCAGGTGGAGAGTAGACTCTTTCTGGATGTTGTAATCGGACAAAGTGCGTCCATCTTCG 109 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||| || ||||||| | || ||||||||||| || || ||||||||||| | Sbjct 110 AGTTGTTTGCCAGCAAAGATCAGTCGCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGG 169 Query 94919 ATTTTTGCCTTGACG 94933 || || ||||| ||| Sbjct 170 ATCTTGGCCTTCACG 184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446740532721000