Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq82596 100 5e-16 >seq82596 Length=456 Score = 100 bits (110), Expect = 5e-16 Identities = 232/347 (67%), Gaps = 2/347 (1%) Strand=Plus/Plus Query 193653 TATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGTATACTTCT 193712 ||| |||||| ||| ||| ||| || || || || ||||| ||||||| ||||| || Sbjct 111 TATCATCTTGCTGCACAATCTCACGT-AAGGTATCGTTTGATCTGCCAGAATATACCGCT 169 Query 193713 AATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGTTGGGAATGGAG 193772 | || || || | || || | ||| ||||||| || | | | | || || Sbjct 170 GAAGTGGACGCAGTTGGCACATTGAGATTACTTGATGCCATCCATGCCTGTGGTCTGACT 229 Query 193773 AAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGTGGTGTTCTAGGCACT 193832 || | |||||| |||| || ||||| || ||| |||| || |||| || | | Sbjct 230 GAAAAGGTTCGCTTCTACCAAGCATCAACTTCCGAGTTGTACGGGAAAGTTCAAGAAATT 289 Query 193833 CCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGTAT 193892 || | | ||| | || || || | || || || ||||||| || || ||| ||||| Sbjct 290 CCTC-AGAAGAGTCAACGCCGTTCTACCCTCGTTCACCTTATGCGGTCGCTAAGATGTAT 348 Query 193893 GGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGTATT 193952 | |||||||||| | | || || || || | || | |||| || |||||| Sbjct 349 GCTTATTGGATCGTTATCAACTACCGAGAAGCTTACAACATGTTCGCTTGTAATGGTATC 408 Query 193953 CTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCG 193999 || ||||||||||| || ||||||||||| ||||| || ||||| Sbjct 409 CTTTTCAATCACGAGAGCCCCAGAAGAGGTGAAACATTCGTCACTCG 455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 804761816091000