Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2084 96.9 4e-15 seq2191 87.8 2e-12 seq131755 86.0 7e-12 seq131535 86.0 7e-12 seq4 84.2 2e-11 >seq2084 Length=7660 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 ||||| || | ||||||| | | ||||| || | || || | ||| || | | | Sbjct 4974 AGTTCCTCCTTGGTTTCAAACTGAGCAAGACCAGCATCTAACGAGGCACAGAACATCTGG 5033 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| |||| ||||||||||| |||||||| ||| |||||||| ||| Sbjct 5034 CTGAATGTCCAATTCCTTGAGTCTTCAGAAAAATAAAAGCACTTACTCCCAAATCCGATC 5093 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||||| | |||||| |||||||| Sbjct 5094 CATCCTTCTGGGCAGGTAACATA 5116 >seq2191 Length=7085 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 130716 AATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCAT 130775 ||||||||||| |||| ||||||||||| |||||||| ||| |||||||| |||||| Sbjct 5273 AATGTCCAATTCCTTGAGTCTTCAGAAAAATAAAAGCACTTACTCCCAAATCCGATCCAT 5332 Query 130776 CCCTTTGGGCAAGTAACA 130793 || | |||||| |||||| Sbjct 5333 CCTTCTGGGCAGGTAACA 5350 >seq131755 Length=364 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 ||||||| || |||||||| | ||| ||||||||| ||| | ||||| | | | Sbjct 310 TTTAAAAGTCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCCGCCATAACTGCAAAGC 251 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| ||| || || |||||||| || || || || || || || Sbjct 250 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTT 191 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 190 CCATAAAATCAAAGGGATTTTC 169 >seq131535 Length=364 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 ||||||| || |||||||| | ||| ||||||||| ||| | ||||| | | | Sbjct 55 TTTAAAAGTCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCCGCCATAACTGCAAAGC 114 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| ||| || || |||||||| || || || || || || || Sbjct 115 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTT 174 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 175 CCATAAAATCAAAGGGATTTTC 196 >seq4 Length=22931326 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||| || |||||||| || | ||| ||| ||| | | ||||| | |||||| | Sbjct 4289174 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTGGACATCACTCCCATCCT 4289115 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||||| || | ||||| || || || || || ||||| ||||||| ||| ||| || Sbjct 4289114 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 4289055 Query 21247 CATAAAATCAAATGGATTTTC 21267 |||||| |||||||||||||| Sbjct 4289054 CATAAAGTCAAATGGATTTTC 4289034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530060921889000