Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq39 134 2e-26 seq4 129 7e-25 seq149 107 2e-18 >seq39 Length=12483156 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| || ||||| || |||||||| || ||||| | Sbjct 4319058 ACCTGAAATTCTCCTGACAAGACTCTGCGGGTGTAGATGTTACTGGTGTAAGGTTCAATT 4318999 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 |||||||||||||||||||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 4318998 GACTCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 4318939 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 4318938 CTGTTTCTTATACCATA 4318922 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 4310639 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 4310580 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 || || || |||||||| ||||| || | ||| || ||| | | || || ||||||| Sbjct 4310579 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 4310520 Query 63332 CGGTTCCAAGTATATGGC 63349 || |||| ||| || || Sbjct 4310519 AGGCTCCAGGTAAATTGC 4310502 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 4315141 CATACGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 4315082 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 ||||||||||||| ||||| | |||||| | || || ||| | || ||||| || | Sbjct 4315081 AATAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGT 4315022 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754 | | | |||||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 4315021 ATCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 4314962 Query 62755 TCTTATTAGA 62764 ||||| || Sbjct 4314961 GTTTATTTGA 4314952 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63456 ATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 63515 || ||||| ||| | || |||||| ||| | | | ||| |||||||| ||| || Sbjct 4307380 ATGTAGCTGCCAGTAGCTCGAATACAACTCACAGCAACACCAATTCCCCCAGCCGACTTG 4307321 Query 63516 GAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATG 63575 || || ||||| ||| | |||| |||||||| || || || ||||||||||| |||| Sbjct 4307320 GAAATCAATGCACATTGCTTTAGAGTGTCATAAATGCCTTCAATGCTATCATCTTTCATA 4307261 Query 63576 TTAAGTAGAAAACAGCTA 63593 | || || ||||||||| Sbjct 4307260 CTCAGAAGGAAACAGCTA 4307243 >seq4 Length=22931326 Score = 129 bits (142), Expect = 7e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| ||||| ||||| |||||||| ||||| || ||||| || || ||||| | Sbjct 4287783 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCT 4287724 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || || || || || || |||||||||||||||||||| ||||| ||||||| Sbjct 4287723 TGAGCCAGAAGATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCCGCAAAGG 4287664 Query 33446 C 33446 | Sbjct 4287663 C 4287663 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||||| || ||||| || | |||||||||||||| ||||| |||||||| ||||| Sbjct 4285510 ATCTTTAATGTAGGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 4285451 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || || || || |||||||| | || || |||||||| |||||| | ||| || || Sbjct 4285450 AATTTGGAAGCCATAGAAACAACGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTC 4285391 Query 33684 CGCC 33687 | || Sbjct 4285390 CACC 4285387 Score = 93.3 bits (102), Expect = 5e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||||| || || || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 4284734 ATCTTTAATGTAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 4284675 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || || || || |||||||| | || || |||||||| |||||| | ||| || || Sbjct 4284674 AATTTGGAAGCCATAGAAACAACGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTC 4284615 Query 33684 CGCC 33687 | || Sbjct 4284614 CACC 4284611 >seq149 Length=4484336 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || ||||| |||||||| ||||| || ||||| || || | ||| || Sbjct 2319665 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCTTC 2319606 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||||||||| | ||| || || || || ||||| |||||||| || ||||||||||| Sbjct 2319605 AGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 2319547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620792386701000