Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq39 91.5 4e-13 seq4 87.8 5e-12 >seq39 Length=12483156 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| |||||||| || || || ||| Sbjct 4311784 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACCGAGACAGGTACCCCGTACATG 4311843 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| ||| |||||| |||| || || || | Sbjct 4311844 CTCTACAAAGATTCCTGTAATCGGAAGAGCAATCAGCAGAACCTGGGAACGATCAAATGC 4311903 Query 364231 AGCAACCTATGTACCGAGAT 364250 |||||||| || || || || Sbjct 4311904 AGCAACCTGTGCACAGAAAT 4311923 >seq4 Length=22931326 Score = 87.8 bits (96), Expect = 5e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||| || | || ||||| | || ||||| || ||||||||||| | ||| || Sbjct 4287651 GAACGTGTTGTAGCCTTTGCGGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCA 4287710 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 ||||| ||||| || || || | | | |||||||| || || ||||| ||||| | ||| Sbjct 4287711 ATCTTCTGGCTCAAGAAGCGAGGACTGATGCCGGGCCTCACATTTTCCAATGAACTTATT 4287770 Query 22609 AGCCGAGATGAGG 22621 ||| |||| |||| Sbjct 4287771 AGCAGAGACGAGG 4287783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1298732508898950