Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq103000 102 7e-17 seq182 84.2 2e-11 seq83363 82.4 7e-11 >seq103000 Length=415 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || | ||||||||| | || || | |||||||||||| Sbjct 176 AATGCAGATCTTTGTGAAGACTCTGACTGGAAAAACAATCACTCTTGAAGTCGAGGCCTC 117 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| |||||| | || ||| || ||| ||||| ||||| || || || ||||| Sbjct 116 AGACACAATCGAGAATGTGAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCAGATCA 57 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||| |||| |||| | |||||||||||| ||||| Sbjct 56 GCAGCGACTTATTTTTGCCGGCAAGCAACTAGAAGA 21 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| |||| || ||| | ||||| |||| || |||||| | Sbjct 403 ATGCAGATCTTTGTGAAAACCCTAACCGGGAAAACAATTACACTCGAGGTTGAGGCCTCC 344 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || ||||||| ||||||||||| || || || ||||| Sbjct 343 GACACCATTGAAAATGTGAAGGCAAAGATTCAAGACAAAGAAGGAATCCCACCGGATCAG 284 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | | ||| ||||| | ||||||| | | | ||||| || Sbjct 283 CAACGGCTAATCTTTGCCGGAAAGCAGTTGGAAGATGGACGCACTCTTTCTGATTACAAT 224 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || |||||||| || |||| Sbjct 223 ATCCAGAAAGAATCAACTCTTCA 201 >seq182 Length=3864254 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || || || || || || || || | || ||| | || || ||| | Sbjct 2229397 CAAAATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCC 2229456 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || |||||||||||| | || || ||||| || || |||||||| || || || Sbjct 2229457 CAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGA 2229516 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||||| || || | || |||||||| || ||||||| | | | | |||||| Sbjct 2229517 CCAGCAGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCCGATTA 2229576 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 2229577 CAACATCCAGAAGGAGTCGAC 2229597 >seq83363 Length=456 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| ||| | || ||| || ||| ||||| ||||| || || || |||||| Sbjct 5 GATACCATTGAGAATGTGAAAGCGAAAATTCAGGACAAGGAAGGAATTCCACCTGATCAA 64 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || |||| || || |||||||| ||||||| | | || |||||||||| Sbjct 65 CAGCGTCTTATTTTCGCAGGAAAGCAACTTGAAGATGGGCGTACACTCTCCGATTATAAC 124 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 |||||||| || || || |||| Sbjct 125 ATTCAAAAGGAGTCAACCCTTCA 147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428486003892375