Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq182 93.3 3e-14 seq150 89.7 4e-13 >seq182 Length=3864254 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| |||||| || |||||||| || |||||||| |||| | || | | || Sbjct 2229613 CAGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATC 2229554 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| || | || |||| ||| ||||| || | ||| || || || Sbjct 2229553 TTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATC 2229494 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||| | ||||||| |||| ||||||| Sbjct 2229493 CTGGATCTTGGC--CTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 2229436 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || || || |||| || || || || |||||||||||| Sbjct 2229435 GTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTTG 2229397 >seq150 Length=4498840 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || || |||||||| | || || | | ||||| | ||| Sbjct 34205 TGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGACAGAGTGCGGCCATCCTCTAGCTGT 34264 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 |||||| || |||| || | ||| || || || | |||||| ||||| || || Sbjct 34265 TTGCCCACAAAAATCAGACACTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGGATTTTA 34324 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| || || | | | ||||| | |||||| || | ||||||||| || || | Sbjct 34325 GCT--TTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCCG 34382 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || ||||| |||||||| Sbjct 34383 TCAGGGTCTTCACAAAGATCTGCAT 34407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403721805907750