Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq107 127 1e-24 seq9381 125 5e-24 seq103000 120 2e-22 seq43 118 7e-22 seq83363 116 2e-21 seq520 104 2e-17 seq221209 95.1 8e-15 seq182 95.1 8e-15 seq103970 84.2 1e-11 seq34 84.2 1e-11 seq150 82.4 5e-11 >seq107 Length=6096024 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 2203761 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 2203702 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 2203701 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 2203667 >seq9381 Length=1156 Score = 125 bits (138), Expect = 5e-24 Identities = 74/77 (96%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 272 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 331 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 332 GGTTGTATTTAGCCTTA 348 >seq103000 Length=415 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 |||||||| || || || |||||||||||||| | | ||| | || || || || Sbjct 201 TGAAGAGTTGATTCTTTCTGGATATTGTAATCAGAAAGAGTGCGTCCATCTTCCAACTGC 260 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 ||||||||||| ||||| ||||| ||||| | |||| ||||||||||| ||| ||| Sbjct 261 TTTCCGGCAAAGATTAGCCGTTGCTGATCCGGTGGGATTCCTTCTTTGTCTTGAATCTTT 320 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||||||| | | || || ||||| || | |||||| ||||| || || Sbjct 321 GCCTTCACATTTTCAATGGTGTCGGAGGCCTCAACCTCGAGTGTAATTGTTTTCCCGGTT 380 Query 38295 AAGGTTTTCACGAATATCTGCATG 38318 | ||||||||| || ||||||||| Sbjct 381 AGGGTTTTCACAAAGATCTGCATG 404 >seq43 Length=11871039 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || ||||||| Sbjct 7943686 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGA 7943745 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||||||||||||||||||||| Sbjct 7943746 TCATCCACTCATGCGCGTCACTAATTAGATGACGA 7943780 >seq83363 Length=456 Score = 116 bits (128), Expect = 2e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 |||||||| || ||||| ||||| | |||| | || || | |||||||||||||| Sbjct 363 TCCTTTTGGATGTTGTAGTCAGAGAGGGTACGTCCATCTTCAAGCTGTTTTCCGGCAAAG 304 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || || || || ||||| | || | ||||| ||||| |||||| |||||||||| Sbjct 303 ATGAGACGCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGAATTTTCGCCTTCACATTC 244 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | || ||||| ||| ||||| || || || || || |||||||||||||| ||| Sbjct 243 TCGATTGTATCAGAGGCTTCCACTTCCAAAGTGATGGTCTTCCCCGTCAAGGTTTTTACG 184 Query 38307 AATATCTGCATG 38318 || || |||||| Sbjct 183 AAAATTTGCATG 172 >seq520 Length=304532 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 301593 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 301534 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 301533 GCCGGTATTTAGCCTTA 301517 >seq221209 Length=250 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| |||| Sbjct 156 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGAATTCGC 97 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||||||| Sbjct 96 GTCTATATTTAGCCTTA 80 >seq182 Length=3864254 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| |||| ||||| |||| ||| || || |||||| || || |||||||| | Sbjct 2229629 TACCACCCCTCAGACGCAGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGG 2229570 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | || || || || || || || | || || || | || Sbjct 2229569 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGGG 2229510 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||| || ||| || || |||||| |||| || || || | || | Sbjct 2229509 GGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCA 2229450 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || | || || || || ||||||||||| |||||||| |||||||| || Sbjct 2229449 CCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTT 2229398 >seq103970 Length=412 Score = 84.2 bits (92), Expect = 1e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| | ||| | ||||||||| |||||| || || |||||||| |||| | || | Sbjct 184 ACGGAGCACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAGAGTTCGGCC 125 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || ||||| |||||||| || || || || || ||||| | |||| ||||| || Sbjct 124 ATCCTCCAATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGAGGGATTCCTTCCTT 65 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGA 38250 ||| ||| || ||||||||||| || Sbjct 64 ATCCTGAATCTTGGCCTTCACATTCTCGA 36 >seq34 Length=12707470 Score = 84.2 bits (92), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 7/95 (7%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| | ||||||||||||||||||| ||| |||||||| ||||| || | |||| Sbjct 7468745 AAGTCTGTTCCCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGGGACAGTGGGAGTCTC-- 7468688 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| ||||||| | |||||||||||||||||| Sbjct 7468687 ACATCCATTCATGCACATCACTAATTAGATGACGA 7468653 >seq150 Length=4498840 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 ||| || || || ||| |||||| ||||||||||| || |||| | || | || || Sbjct 34198 CACTAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGACAGAGTGCGGCCATCCTC 34257 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 || ||||| || |||| || || | || ||||| | |||| ||| || ||||| Sbjct 34258 TAGCTGTTTGCCCACAAAAATCAGACACTGCTGATCAGGTGGGATGCCCTCCTTGTCTTG 34317 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 ||||| || ||||||| | || || | ||||| || | || || || || Sbjct 34318 GATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTT 34377 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| ||| ||||| || |||||||| Sbjct 34378 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 34407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 333817561783475