Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq103000 123 2e-23 seq150 116 3e-21 seq83363 96.9 3e-15 seq260794 91.5 1e-13 >seq103000 Length=415 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | ||||| ||| | || ||| |||| || ||| | || Sbjct 403 ATGCAGATCTTTGTGAAAACCCTAACCGGGAAAACAATTACACTCGAGGTTGAGGCCTCC 344 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || ||||| |||| | ||| ||||||||||| || ||||| || || Sbjct 343 GACACCATTGAAAATGTGAAGGCAAAGATTCAA-GACAAAGAAGGAATCCCACCGGATCA 285 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || ||| | || |||||||| || || || ||||||| |||||| | |||||||| Sbjct 284 GCAACGGCTAATCTTTGCCGGAAAGCAGTTGGAAGATGGACGCACTCTTTCTGATTACAA 225 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| || |||||||| || || || | || || | || ||||||||| Sbjct 224 TATCCAGAAAGAATCAACTCTTCACCTTGTTCTCCGTCTTCGAGGAGGAA 175 Score = 118 bits (130), Expect = 9e-22 Identities = 122/157 (78%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||| |||| || ||| | ||||| | ||||| ||| | || Sbjct 176 AATGCAGATCTTTGTGAAGACTCTGACTGGAAAAACAATCACTCTTGAAGTCGAGGCCTC 117 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| |||||| |||| || |||| ||| ||||| ||||| || ||||| || | Sbjct 116 AGACACAATCGAGAATGTGAAAGCCAAAATTCAA-GACAAGGAAGGAATCCCACCAGATC 58 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGA 25153 | ||||| |||||||||||||||| ||| ||||||| Sbjct 57 AGCAGCGACTTATTTTTGCCGGCAAGCAACTAGAAGA 21 >seq150 Length=4498840 Score = 116 bits (128), Expect = 3e-21 Identities = 156/214 (73%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| |||| || ||| | | Sbjct 34407 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 34348 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || |||| |||| || ||||| || || || |||||||| Sbjct 34347 GACACCATTGAG--AATGTCAAAGCTAAAATCCAA-GACAAGGAGGGCATCCCACCTGAT 34291 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | ||||||| |||||||| |||| |||| |||||| || || ||| Sbjct 34290 CAGCAGTGTCTGATTTTTGTGGGCAAACAGCTAGAGGATGGCCGCACTCTGTCAGACTAC 34231 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGC 25209 |||||||| || || ||||| || || ||||||| Sbjct 34230 AATATTCAGAAGGAGTCCACCCTGCACTTAGTGC 34197 >seq83363 Length=456 Score = 96.9 bits (106), Expect = 3e-15 Identities = 126/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 25055 GTCTGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||||| || || ||| |||| || |||| ||| ||||| ||||| |||||||||| Sbjct 1 GTCTGATACCATTGAGAATGTGAAAGCGAAAATTCAG-GACAAGGAAGGAATTCCACCTG 59 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | |||||||| ||||||| || || || ||| | ||||||| || || | ||||| Sbjct 60 ATCAACAGCGTCTTATTTTCGCAGGAAAGCAACTTGAAGATGGGCGTACACTCTCCGATT 119 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || |||||||| || || || || || | ||||| | || ||||||| Sbjct 120 ATAACATTCAAAAGGAGTCAACCCTTCACCTTGTGCTCCGTCTTCGAGGAGG 171 >seq260794 Length=213 Score = 91.5 bits (100), Expect = 1e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 25050 GAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCA 25109 ||| | |||||||| || || ||||| || ||| ||||||||||| || || Sbjct 207 GAGGCCTCTGACACCATTGAAAACGTGAAGGCCAAGATCCAGGACAAAGAAGGAATCCCC 148 Query 25110 CCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGC 25169 || || || ||||| | || ||||| ||||||||| | ||||||| |||||| || | Sbjct 147 CCAGATCAGCAGCGACTGATCTTTGCTGGCAAACAACTCGAAGATGGACGCACTTTGTCC 88 Query 25170 GATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||| || || ||||| || || || || | || || | ||| | || |||| Sbjct 87 GATTACAACATCCAGAAAGAGTCTACTCTCCACCTGGTTCTCCGACTACGTGGTGGAA 30 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431866564080875