Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq83363 158 1e-33 seq150 132 4e-26 seq103000 125 6e-24 seq584 96.9 3e-15 seq103970 91.5 1e-13 seq180 84.2 2e-11 >seq83363 Length=456 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| || || || || || ||||| | ||||||||| || | Sbjct 173 ATGCAAATTTTCGTAAAAACCTTGACGGGGAAGACCATCACTTTGGAAGTGGAAGCCTCT 232 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||||||||||||||||| || |||||||| ||||| Sbjct 233 GATACAATCGAGAATGTGAAGGCGAAAATTCAAGACAAGGAAGGAATTCCACCAGATCAG 292 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || |||||||| |||||| | || ||| || ||| |||| || |||||| Sbjct 293 CAGCGTCTCATCTTTGCCGGAAAACAGCTTGAAGATGGACGTACCCTCTCTGACTACAAC 352 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| ||||| ||| | ||| | ||| | || | || ||||| Sbjct 353 ATCCAAAAGGAATCAACCCTCCATCTTGTTCTCCGTCTCCGAGGAGG 399 Score = 100 bits (110), Expect = 2e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| |||||||| |||||||| || |||||||| |||||| Sbjct 5 GATACCATTGAGAATGTGAAAGCGAAAATTCAGGACAAGGAAGGAATTCCACCTGATCAA 64 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || || || || || | || ||| || || |||||||||| ||| Sbjct 65 CAGCGTCTTATTTTCGCAGGAAAGCAACTTGAAGATGGGCGTACACTCTCCGATTATAAC 124 Query 22399 ATTCAAAAAGAATCCACC 22416 |||||||| || || ||| Sbjct 125 ATTCAAAAGGAGTCAACC 142 >seq150 Length=4498840 Score = 132 bits (146), Expect = 4e-26 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||| || || || || ||| Sbjct 34409 AGATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCA 34350 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | || || ||||| ||||| |||||||||||||| || ||||| |||| Sbjct 34349 GTGACACCATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGATC 34290 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || |||| || |||| ||||||||| |||||||| |||||| | || || |||| Sbjct 34289 AGCAGTGTCTGATTTTTGTGGGCAAACAGCTAGAGGATGGCCGCACTCTGTCAGACTACA 34230 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGT 22427 | ||||| || || |||||| | || ||||| Sbjct 34229 ATATTCAGAAGGAGTCCACCCTGCACTTAGT 34199 >seq103000 Length=415 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| ||||||| ||||| | || || || || || || || Sbjct 403 ATGCAGATCTTTGTGAAAACCCTAACCGGGAAAACAATTACACTCGAGGTTGAGGCCTCC 344 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||| ||||||||||| || || || ||||| ||||| Sbjct 343 GACACCATTGAAAATGTGAAGGCAAAGATTCAAGACAAAGAAGGAATCCCACCGGATCAG 284 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || |||||||| || ||||| || ||| ||||| | || |||||||| Sbjct 283 CAACGGCTAATCTTTGCCGGAAAGCAGTTGGAAGATGGACGCACTCTTTCTGATTACAAT 224 Query 22399 ATTCAAAAAGAATCCAC 22415 || || |||||||| || Sbjct 223 ATCCAGAAAGAATCAAC 207 Score = 114 bits (126), Expect = 1e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || || ||||| ||||||||||||| || || | Sbjct 175 ATGCAGATCTTTGTGAAGACTCTGACTGGAAAAACAATCACTCTTGAAGTCGAGGCCTCA 116 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| ||||||||||||||||| || || ||||| ||||| Sbjct 115 GACACAATCGAGAATGTGAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCAGATCAG 56 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 || || ||||| ||||||||||| || |||| || ||| ||| | ||||| Sbjct 55 CAGCGACTTATTTTTGCCGGCAAGCAACTAGAAGACGGCCGTACCCTTTCCGA 3 >seq584 Length=118070 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | | || || || |||| ||||| || | ||| Sbjct 49197 AGATGCAGATCTTTGTGAAGACCCTGATAGGCAAGACCATCACCCTTGAGGTTAAGCCCA 49138 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || | | | || || ||||| ||||| |||||||||||||| || ||||| || | Sbjct 49137 GTGACATCATTGAGAATGTCAAAGTTAAAATCCAAGACAAGGAGGGCATCCCACCTGACC 49078 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | ||| || |||| |||||||| | |||||| || ||| || || |||| Sbjct 49077 AGCAGCATCTGATTTTTGTGAGCAAACAGCTGGAGGATGGCCACACTCCATCAGACTACA 49018 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGT 22427 | ||||| || || |||||| | || || || Sbjct 49017 ATATTCAGAATGAGTCCACCTTGCACTTGGT 48987 >seq103970 Length=412 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 22256 TCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACA 22315 ||||||| || || || || | || ||| | || || | || || ||||| || | Sbjct 6 TCACTCTCGAGGTTGAGGCCTCTGACACCATCGAGAATGTGAAGGCCAAGATTCAGGATA 65 Query 22316 AGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATC 22375 |||| || || || || ||||| || |||||||| || ||||| || || || |||||| Sbjct 66 AGGAAGGAATCCCTCCTGATCAGCAGCGTCTTATCTTCGCCGGAAAGCAATTGGAGGATG 125 Query 22376 ACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| || | |||||||||||||| || || || ||||| Sbjct 126 GCCGAACTCTGTCCGATTACAACATCCAGAAGGAGTCCAC 165 >seq180 Length=3735678 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| |||||||| || || || || | || |||| || || || || ||| Sbjct 1580498 AGATGCAGATTTTTGTGAAGACCCCGACGGGCCAGACCATCACCCTCGAGGTTGAGTCCA 1580439 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || || | | || ||||| ||||| |||||||||||| || |||| || | Sbjct 1580438 CTGACACTGATAAGAATGTCAAAGCTAAAATCTAAGACAAGGAGGTCATCTCACCTGACC 1580379 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | ||| || || | || |||||| | |||||| |||||| | || || ||| Sbjct 1580378 AGCAGCATCTGATTTTCACGGGGAAACAGCTGGAGGATGGCCGCACTCTGTCAGACTACG 1580319 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGT 22427 | |||| ||||| |||||| | || | ||| Sbjct 1580318 ATGTTCAGAAAGAGTCCACCTTGCACTCAGT 1580288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418312431249625