Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq182 176 8e-39 seq83363 161 2e-34 seq103000 152 9e-32 seq82596 140 6e-28 seq103970 132 9e-26 seq150 125 1e-23 seq299 113 8e-20 seq98 113 8e-20 seq55 89.7 9e-13 seq584 87.8 3e-12 seq180 86.0 1e-11 >seq182 Length=3864254 Score = 176 bits (194), Expect = 8e-39 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||| || || || ||||| || |||||||| |||||||| || || | Sbjct 2229618 AGACGCAGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGG 2229559 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || ||||| ||||| || || ||||| || || ||||||||| Sbjct 2229558 CCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCC 2229499 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || ||||| ||||| ||| |||||||||||| | || || |||| |||| Sbjct 2229498 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 2229439 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 ||||| || ||||| | |||||| ||||| ||||||||| || Sbjct 2229438 ATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTTG 2229397 Score = 168 bits (186), Expect = 1e-36 Identities = 165/210 (79%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| || || || ||||| || |||||||| ||||| || || || | |||||||| Sbjct 2229837 ACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 2229778 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || ||||| ||||| || || ||||| || || ||||||||||| || || Sbjct 2229777 AGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGG 2229718 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 ||||| ||||| ||| |||||||||||| ||| | || || |||| ||||||||| || Sbjct 2229717 ATCTTGGCCTTCACGTTCTCGATGGTGTC-GCTGGGCTCCACCTCCAGGGTGATGGTCTT 2229659 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| ||||| |||||||| Sbjct 2229658 GCCGGTCAGGGTCTTCACGAAGATCTGCAT 2229629 >seq83363 Length=456 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| || || || | || | || || || || || ||||||||||| || || | Sbjct 401 TTCCTCCTCGGAGACGGAGAACAAGATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAG 342 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 |||| || | |||||||| | ||| || ||||| || ||||| | || || || |||| Sbjct 341 AGAGGGTACGTCCATCTTCAAGCTGTTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTG 282 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||||||||||||||| || ||||| || |||||| || || | | ||| | Sbjct 281 GAATTCCTTCCTTGTCTTGAATTTTCGCCTTCACATTCTCGATTGTATCAGAGGCTTCCA 222 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||| |||||||| || ||||| | ||| || ||||| || ||||| Sbjct 221 CTTCCAAAGTGATGGTCTTCCCCGTCAAGGTTTTTACGAAAATTTGCAT 173 Score = 134 bits (148), Expect = 3e-26 Identities = 130/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | || | ||| || || ||||| ||||| ||||||||||||||| Sbjct 171 CCTCCTCGAAGACGGAGCACAAGGTGAAGGGTTGACTCCTTTTGAATGTTATAATCGGAG 112 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | ||||||||| | ||||| || ||||| || || | ||||| || |||||| Sbjct 111 AGTGTACGCCCATCTTCAAGTTGCTTTCCTGCGAAAATAAGACGCTGTTGATCAGGTGGA 52 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTC 68401 || ||||||||||| ||||| || || || || ||| ||||| || Sbjct 51 ATTCCTTCCTTGTCCTGAATTTTCGCTTTCACATTCTCAATGGTATC 5 >seq103000 Length=415 Score = 152 bits (168), Expect = 9e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| ||||| || | || | ||| || || || ||||| ||||| || ||||| | Sbjct 175 TTCCTCCTCGAAGACGGAGAACAAGGTGAAGAGTTGATTCTTTCTGGATATTGTAATCAG 234 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | |||||||| |||||||| ||||| || || || | ||| || || |||| Sbjct 235 AAAGAGTGCGTCCATCTTCCAACTGCTTTCCGGCAAAGATTAGCCGTTGCTGATCCGGTG 294 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || ||||| |||||||||||||||||||| || || |||||||| | | || | Sbjct 295 GGATTCCTTCTTTGTCTTGAATCTTTGCCTTCACATTTTCAATGGTGTCGGAGGCCTCAA 354 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || | || || ||||| || || ||||| || || || |||||||| Sbjct 355 CCTCGAGTGTAATTGTTTTCCCGGTTAGGGTTTTCACAAAGATCTGCAT 403 Score = 125 bits (138), Expect = 1e-23 Identities = 132/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 ||||| || || | || ||||||| ||||| ||||| || || |||| || || || Sbjct 3 TCGGAAAGGGTACGGCCGTCTTCTAGTTGCTTGCCGGCAAAAATAAGTCGCTGCTGATCT 62 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 ||||| || ||||||||||||||||| || || || || |||||| ||||||| | Sbjct 63 GGTGGGATTCCTTCCTTGTCTTGAATTTTGGCTTTCACATTCTCGATTGTGTCTGAGGCC 122 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || ||||| | ||||| |||||||| || || ||||| || || ||||||||| Sbjct 123 TCGACTTCAAGAGTGATTGTTTTTCCAGTCAGAGTCTTCACAAAGATCTGCATT 176 >seq82596 Length=456 Score = 140 bits (154), Expect = 6e-28 Identities = 162/216 (75%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 268376 CGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCAC 268435 || || ||||| || || || | | ||||||||||| ||||| ||||| || || || Sbjct 455 CGAGTGACGAATGTTTCACCTCTTCTGGGGCTCTCGTGATTGAAAAGGATACCATTACAA 396 Query 268436 GCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCA 268495 ||||||||| || || || |||||||| | || |||| || ||| ||||||| || Sbjct 395 GCGAACATGTTGTAAGCTTCTCGGTAGTTGATAACGATCCAATAAGCATACATCTTAGCG 336 Query 268496 ACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGA-TCTTTTGAGGGATTTCTCGGAC 268554 || || || || ||||| || | ||| ||||| ||| |||| ||||| |||||| | || Sbjct 335 ACCGCATAAGGTGAACGAGGGTAGAACGGCGT--TGACTCTTCTGAGGAATTTCTTGAAC 278 Query 268555 TTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAA 268590 ||| || | | |||||| || |||||||||||||| Sbjct 277 TTTCCCGTACAACTCGGAAGTTGATGCTTGGTAGAA 242 >seq103970 Length=412 Score = 132 bits (146), Expect = 9e-26 Identities = 147/196 (75%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| ||||| || | || | ||| || |||||||| || |||||||| ||||||| Sbjct 197 TTCCTCCACGAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGG 138 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | ||||| || || ||||| |||||||| || || | || || || || | Sbjct 137 ACAGAGTTCGGCCATCCTCCAATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGAG 78 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || |||||||| || |||||||| ||||| || |||||||||||| | | || | Sbjct 77 GGATTCCTTCCTTATCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCAGAGGCCTCAA 18 Query 68413 CTTCCAAGGTGATGGT 68428 | || | |||||||| Sbjct 17 CCTCGAGAGTGATGGT 2 >seq150 Length=4498840 Score = 125 bits (138), Expect = 1e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 || ||||| || |||||||| || || || || || || || || || | ||||| ||| Sbjct 34199 ACTAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGACAGAGTGCGGCCATCCTCT 34258 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || | || || || | || || || ||||| ||||| ||||||||||| Sbjct 34259 AGCTGTTTGCCCACAAAAATCAGACACTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGG 34318 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || || ||||| ||| |||||||| | || || || | ||||||||| || Sbjct 34319 ATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTG 34378 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| || || |||||||| Sbjct 34379 CCCGTCAGGGTCTTCACAAAGATCTGCAT 34407 >seq299 Length=1488728 Score = 113 bits (124), Expect = 8e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | | ||||| |||||||| || ||||| || || |||||||| || || || Sbjct 453102 CCTCCCCTTAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 453161 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | ||| ||||| || || || | || || ||||| || | Sbjct 453162 AGGGTGCGCCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGAAGG 453221 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| || || ||||| ||| | ||||||| ||||||||||| | || || Sbjct 453222 ATGCCCTCTTTTTCTTGGATCGTCCCCTTGACATTTTCGATGGTGTCACTGGGCTCCACC 453281 Query 68415 TCCAAGGTGATGGTTTT 68431 |||| ||||||||| || Sbjct 453282 TCCAGGGTGATGGTCTT 453298 >seq98 Length=6767347 Score = 113 bits (124), Expect = 8e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 68303 CCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTC 68362 ||||||||| | ||| ||||| || || || | || || ||||| || || ||||| || Sbjct 4449260 CCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTC 4449201 Query 68363 CTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGT 68422 || ||||| ||||| ||||||| ||||||||||| | || || |||| ||| Sbjct 4449200 TTTTTCTTGGATCTTCCCCTTGACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGT 4449141 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||| || ||||| | |||||| ||||| ||||||||| Sbjct 4449140 GATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATT 4449101 >seq55 Length=9879816 Score = 89.7 bits (98), Expect = 9e-13 Identities = 111/150 (74%), Gaps = 3/150 (2%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||| || |||||||| |||| || ||||| ||||||||| Sbjct 2501353 ACCAGGTGCAGGGTTGACT--TTCTGGATGTTGTAATTAGAAAGTGTGAGGCCATCTTCT 2501410 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGG-GTGGAATGCCTTCCTTGTCTTG 68371 | ||| || | || || ||||| || || ||| || | || ||||| ||||| || || Sbjct 2501411 AGCTGTTTGACTGCAAAGATGAGCCTCTGCTGGCTGGTGGGGGATGCCGTCCTTATCCTG 2501470 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTC 68401 ||||||||||| || ||||||||| || Sbjct 2501471 GATCTTTGCCTTCACATTCTCGATGGTATC 2501500 >seq584 Length=118070 Score = 87.8 bits (96), Expect = 3e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA--GAGTGTCCTCCCATCTT 68310 |||||||| | |||||||| || || || || || || || |||||| ||||| | Sbjct 48987 ACCAAGTGCAAGGTGGACTCATTCTGAATATTGTAGTCTGATGGAGTGTGG--CCATCCT 49044 Query 68311 CTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTT 68370 | | ||| || | | || || || || ||||| ||||| ||||| |||||||||| Sbjct 49045 CCAGCTGTTTGCTCACAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTT 49104 Query 68371 GAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTT 68430 | || || | ||||| ||| ||| |||| | | || || | ||||||||| | Sbjct 49105 GGATTTTAACTTTGACATTCTCAATGATGTCACTGGGCTTAACCTCAAGGGTGATGGTCT 49164 Query 68431 TTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || | |||||||| || || |||||||| Sbjct 49165 TGCCTATCAGGGTCTTCACAAAGATCTGCAT 49195 >seq180 Length=3735678 Score = 86.0 bits (94), Expect = 1e-11 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 68257 AGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACT 68316 |||| | ||||||||||| || | | || || || || || | ||||| || | || Sbjct 1580292 AGTGCAAGGTGGACTCTTTCTGAACATCGTAGTCTGACAGAGTGCGGCCATCCTCCAGCT 1580351 Query 68317 GCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCT 68376 | ||||| | ||| || || || ||||| |||| ||| | |||||||||| || | Sbjct 1580352 GTTTCCCCGTGAAAATCAGATGCTGCTGGTCAGGTGAGATGACCTCCTTGTCTTAGATTT 1580411 Query 68377 TTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCG 68436 | || ||||| || ||||| | || || || || | ||||||||| | |||| Sbjct 1580412 TAGCTTTGACATTCTTATCAGTGTCAGTGGACTCAACCTCGAGGGTGATGGTCTGGCCCG 1580471 Query 68437 TGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||| || || |||||||| Sbjct 1580472 TCGGGGTCTTCACAAAAATCTGCAT 1580496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918434450517000