Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4 87.8 3e-12 seq149 84.2 4e-11 >seq4 Length=22931326 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| | || || || || |||||||| || || | || || || ||||||||| Sbjct 4287660 GTAGCCTTTGCGGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATCTTCTGG 4287719 Query 42768 CTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| || ||| | |||||| || ||||| || || || ||||| || ||||| || Sbjct 4287720 CTCAAGAAGCGAGGACT-GATGCCGGGCCTCACATTTTCCAATGAACTTATTAGCAGAGA 4287778 Query 42827 CGAGG 42831 ||||| Sbjct 4287779 CGAGG 4287783 >seq149 Length=4484336 Score = 84.2 bits (92), Expect = 4e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || || ||| |||| |||||| | || || || || || |||||||| ||| | || || Sbjct 2319532 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTGGAAGGAATTTTCTTCTCAGGCTCTTTTGCT 2319591 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | || || ||||| ||| ||| |||| | ||||| || ||||| || || || ||||| Sbjct 2319592 GCTATATTTTGGCTGAAGAAGAGAGGTCTT-ATGCCTGGCCTCACTTTTTCCAATGAACT 2319650 Query 42815 CATCAGCAGGGACGA 42829 ||||||||| || || Sbjct 2319651 CATCAGCAGAGATGA 2319665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 941072671686000