Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq240 197 1e-45 seq49 111 1e-19 >seq240 Length=2402814 Score = 197 bits (218), Expect = 1e-45 Identities = 434/650 (67%), Gaps = 3/650 (0%) Strand=Plus/Minus Query 20171 AGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCG 20230 || ||||| || || | |||| ||||||||||||||||| ||||| | ||| || || Sbjct 1020297 AGCGGCTCAATGTGATTCATGTAAATGTGGGCATCTCCCAAAGTGTGTACAAAGTCACCT 1020238 Query 20231 GGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTA 20290 || | || || || | || |||| ||| || || | ||||| |||||||| ||||| Sbjct 1020237 GGCTTCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTG 1020178 Query 20291 AAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCG 20350 || || | |||| |||||||||||||||| || |||||||| ||||| ||||||||| Sbjct 1020177 AAGGGCATGCCCAGGCCCATGTCTCCCGACCACTCGTACAGCTGGCAGGACAGCTCACCG 1020118 Query 20351 TCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCC 20410 | | || || || || || | | ||||| || || ||| | | || | || Sbjct 1020117 TTCACCACGTAGAACTGGCAAAGGGCAGGGCAGGGTGGGAGGGCCGTGAGCGCGAGATCT 1020058 Query 20411 GCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCC 20470 || ||||| |||||||| |||| |||| || | || || |||| ||| || Sbjct 1020057 TTTGGATTCCAGGCACACATGATGACGATTCTGTCATTAGGGTTGGTTTTGATTGTGTCA 1019998 Query 20471 ACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTAC 20530 | | | || ||||| | || | ||||| ||| || | |||| || ||| Sbjct 1019997 GTCACCTTCTGCAGCTGGTCTACTCCTTCGCCTGAATAATCTGAATCCATATCTTTGTAT 1019938 Query 20531 GCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTG 20590 | |||||||| ||||||||||| || |||||||| || || | ||| || | |||| Sbjct 1019937 TCGGCCCCAAAATGCCTCCACTGAAAGCCGTAAACCGGGCCTAGATCTCCTGC---TCTG 1019881 Query 20591 TGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACT 20650 | | || | | | ||| ||| || | ||| ||| | |||||| || || ||| Sbjct 1019880 GTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCACTGGCGTCCCAGATTTTCACT 1019821 Query 20651 CCTGTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGC 20710 || | || |||||| | | || || ||||| | |||||| |||| | | | Sbjct 1019820 CCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAATCCCTCC 1019761 Query 20711 ACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAAGTGGTCCCGCAGACTA 20770 | || || ||| || || || || || || || | ||||| | || | ||| || Sbjct 1019760 AAAACATCTTCCCAGAAAACACGTTTGGTTGTGAGCAGTGGAAATTCATCTCTCAGGCTG 1019701 Query 20771 TACCTGGCCTGCATGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCGGTC 20820 || | |||||||||| || | || |||||||| |||| ||||||| Sbjct 1019700 TAGCGCGCCTGCATGCTGAACACCGACAGGGTGCCGGTGCCCATGCGGTC 1019651 >seq49 Length=11369404 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || || | ||| || || | |||||||||||||| ||||| || || || |||| ||| Sbjct 7921582 TGTGCGATCATGTAGGTGAGCAGGGAATAGCTGGCGATGTTGAAGGGCACGCCCAGGCCC 7921523 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 ||||||||||||| ||| |||||||| ||||| |||||||||| | || || || || Sbjct 7921522 ATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGG 7921463 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCAT 20397 || | ||| |||||||| || ||||| Sbjct 7921462 CAAAGGGCGTGGCAGGGCGGGAGGGCCAT 7921434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 439846063899000