Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq182 129 1e-24 seq103000 123 6e-23 seq83363 114 3e-20 seq260794 109 1e-18 seq82596 105 2e-17 seq103970 96.9 8e-15 >seq182 Length=3864254 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || | || ||||| || ||||| | || || ||||||||| Sbjct 2229819 TCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAG 2229760 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| ||||| ||||||||||| || || |||||||| Sbjct 2229759 ATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 2229700 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| | || || || || ||||| ||||| |||||||| ||||| ||| Sbjct 2229699 TCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 2229640 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 2229639 AAGATCTGCAT 2229629 Score = 122 bits (134), Expect = 2e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || |||| || ||||| || ||||| | || || ||||||||| Sbjct 2229591 TCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAG 2229532 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| ||||| ||||||||||| || || |||||||| Sbjct 2229531 ATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 2229472 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| || |||| ||||| ||| Sbjct 2229471 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACG 2229412 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 2229411 AAGATCTGCATTTTG 2229397 >seq103000 Length=415 Score = 123 bits (136), Expect = 6e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | || || || |||| || |||||| |||||||| || || | Sbjct 176 TCCTCCTCGAAGACGGAGAACAAGGTGAAGAGTTGATTCTTTCTGGATATTGTAATCAGA 235 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || |||||||| ||||| || || ||||| || ||||| || || || ||| ||| Sbjct 236 AAGAGTGCGTCCATCTTCCAACTGCTTTCCGGCAAAGATTAGCCGTTGCTGATCCGGTGG 295 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||||||| || || || || || ||||| ||||| || | ||| | || || Sbjct 296 GATTCCTTCTTTGTCTTGAATCTTTGCCTTCACATTTTCAATGGTGTCGGAGGCCTCAAC 355 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || |||||||| || || || || || |||||||| Sbjct 356 CTCGAGTGTAATTGTTTTCCCGGTTAGGGTTTTCACAAAGATCTGCAT 403 Score = 111 bits (122), Expect = 4e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 288299 AGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAG 288358 |||||| || || || |||||||||| ||| || || || || || || ||||| ||| Sbjct 1 AGTCGGAAAGGGTACGGCCGTCTTCTAGTTGCTTGCCGGCAAAAATAAGTCGCTGCTGAT 60 Query 288359 AATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 |||||||||||| || || || ||||| |||||||| || || || | || | Sbjct 61 CTGGTGGGATTCCTTCCTTGTCTTGAATTTTGGCTTTCACATTCTCGATTGTGTCTGAGG 120 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||| || ||||| || || || ||||||||||| || || ||||||||| Sbjct 121 CCTCGACTTCAAGAGTGATTGTTTTTCCAGTCAGAGTCTTCACAAAGATCTGCATT 176 >seq83363 Length=456 Score = 114 bits (126), Expect = 3e-20 Identities = 104/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || ||||| |||| ||| || || || ||||| | ||| ||||||||||| Sbjct 135 TCCTTTTGAATGTTATAATCGGAGAGTGTACGCCCATCTTCAAGTTGCTTTCCTGCGAAA 76 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||||||| | ||| |||||||| || ||||| |||||||||||||| || Sbjct 75 ATAAGACGCTGTTGATCAGGTGGAATTCCTTCCTTGTCCTGAATTTTCGCTTTCACATTC 16 Query 288403 TCTATAGAATC 288413 || || | ||| Sbjct 15 TCAATGGTATC 5 >seq260794 Length=213 Score = 109 bits (120), Expect = 1e-18 Identities = 124/165 (75%), Gaps = 6/165 (4%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || |||| || || || || | || ||||| ||||| || || |||| Sbjct 31 TCCACCACGTAGTCGGAGAACCAGGTGGAGAGTAGACTCTTTCTGGATGTTGTAATCGGA 90 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | |||||||| ||||| | |||||| || || |||||||| ||||| ||| ||||| Sbjct 91 CAAAGTGCGTCCATCTTCGAGTTGTTTGCCAGCAAAGATCAGTCGCTGCTGA---TCTGG 147 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTAT 288407 | ||||||||||| |||||||| || || ||||||||||| || Sbjct 148 GGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTTTCAAT 192 >seq82596 Length=456 Score = 105 bits (116), Expect = 2e-17 Identities = 150/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 72416 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 72475 |||||| || | || |||||||| || ||||| |||||||||||||||| | | || Sbjct 247 CCAAGCATCAACTTCCGAGTTGTACGGGAAAGTTCAAGAAATTCCTCAGAAGAGTCA-AC 305 Query 72476 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAA 72535 ||||| || ||||| ||||| | || || ||| |||| |||||||||||| || Sbjct 306 GCCGTTCTACCCTCGTTCACCTTATGCGGTCGCTAAGATGTATGCTTATTGGATCGTTAT 365 Query 72536 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAG 72595 || ||||| || | || ||||||| | || || || ||||||||||||||| Sbjct 366 CAACTACCGAGAAGCTTACAACATGTTCGCTTGTAATGGTATCCTTTTCAATCACGAGAG 425 Query 72596 TCCCAACAGAGGCCATCAGTTCGTGACTCG 72625 |||| ||||| | ||||| ||||| Sbjct 426 CCCCAGAAGAGGTGAAACATTCGTCACTCG 455 >seq103970 Length=412 Score = 96.9 bits (106), Expect = 8e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | || || || |||| ||| || || ||||| || || |||| Sbjct 196 TCCTCCACGAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGA 137 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || || || || ||||| ||||| |||||||| |||||||| ||| | || Sbjct 136 CAGAGTTCGGCCATCCTCCAATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGAGG 77 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| |||||||| || || || ||||| || || || | || | || || Sbjct 76 GATTCCTTCCTTATCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCAGAGGCCTCAAC 17 Query 288426 TTCGAGCGTGATCGTC 288441 ||||| ||||| ||| Sbjct 16 CTCGAGAGTGATGGTC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1175471889244550