Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq150 127 2e-24 seq314 96.9 4e-15 seq98 95.1 1e-14 seq584 91.5 2e-13 seq211 91.5 2e-13 seq8 91.5 2e-13 seq1549 89.7 6e-13 seq441 89.7 6e-13 seq192 82.4 8e-11 seq24 82.4 8e-11 >seq150 Length=4498840 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||| || |||| ||| |||||| ||||||||||| || | |||||| || | || || Sbjct 34198 CACTAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGACAGAGTGCGGCCATCCTC 34257 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||| || || | || || || | |||||| || | ||| | || ||||||||| Sbjct 34258 TAGCTGTTTGCCCACAAAAATCAGACACTGCTGATCAGGTGGGATGCCCTCCTTGTCTTG 34317 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 |||||| ||||| || | | ||||| || | || || |||| |||||||| || Sbjct 34318 GATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTT 34377 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| || ||||| |||||||| ||||| Sbjct 34378 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 34407 >seq314 Length=1336125 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 1142743 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 1142684 Query 57065 TATACTACCGAGGATTGA 57082 ||||||| |||||| ||| Sbjct 1142683 TATACTAACGAGGAATGA 1142666 >seq98 Length=6767347 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | || |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4431820 CTCCCCGTCGAGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4431761 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 4431760 TACTAACGAGGA 4431749 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4439550 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4439491 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 4439490 TACTAACGAGGA 4439479 >seq584 Length=118070 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| ||||| ||| ||| || ||||||||||| || | |||| | | || || Sbjct 48986 CACCAAGTGCAAGGTGGACTCATTCTGAATATTGTAGTCTGATGGAGTGTGGCCATCCTC 49045 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 ||||| || | | || || || |||||||||| | ||| | || ||||||||| Sbjct 49046 CAGCTGTTTGCTCACAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 49105 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 |||||| ||||| || | | |||| || | | || || | |||||||| || Sbjct 49106 GATTTTAACTTTGACATTCTCAATGATGTCACTGGGCTTAACCTCAAGGGTGATGGTCTT 49165 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| | || ||||| |||||||| ||||| Sbjct 49166 GCCTATCAGGGTCTTCACAAAGATCTGCAT 49195 >seq211 Length=2993106 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 76545 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 76486 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 76485 ATACTAACGAGGA 76473 >seq8 Length=20427491 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 19562069 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 19562010 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 19562009 ATACTAACGAGGA 19561997 >seq1549 Length=9383 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 7955 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 7896 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 7895 TACTAACGAGGA 7884 >seq441 Length=377441 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 14417 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 14358 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 14357 TACTAACGAGGA 14346 >seq192 Length=3444459 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1014703 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 1014644 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 1014643 ATACTAACGAGGA 1014631 >seq24 Length=14023012 Score = 82.4 bits (90), Expect = 8e-11 Identities = 125/178 (70%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 42024 TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGT 42083 ||||||||||| || | | | || || | ||||| ||||| | || ||||| | || Sbjct 9383748 TGAATATTGTAGTCTGACGGGGTGCGGCCCTCATCCAGCTGTTCGCCCGCGAAACTCAGA 9383807 Query 42084 CGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC 42143 ||||||||||| | ||| | || ||| ||||| ||||||| | ||| || | Sbjct 9383808 CGCTGCTGGTCAGGTGGGATGCCCTCTTTGTCTTTGATTTTAGCTCTGACATTCTCAGTG 9383867 Query 42144 GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGA 42201 ||||| | | || || |||| |||| ||| |||||||| || |||| ||||||| Sbjct 9383868 GTGTCACAGGGCTCAACCTCGAGGGTGAGGGTCTTGCCCGTCAGGCTCTTCACAAAGA 9383925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541333792974000