Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq83363 179 4e-40 seq182 127 2e-24 seq103000 105 7e-18 seq98 87.8 2e-12 seq299 86.0 6e-12 >seq83363 Length=456 Score = 179 bits (198), Expect = 4e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || ||||| ||||| |||||||| || | || ||| || | ||| Sbjct 384 AGAACAAGATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGTCCATCT 325 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||| || |||||| | ||||| |||||||| || || ||||||||||| || ||| Sbjct 324 TCAAGCTGTTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGGAATTCCTTCCTTGTCT 265 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| ||| | ||||||| ||| |||||||| | ||| | |||| Sbjct 264 TGAATTTTCGCCTTCACATTCTCGATTGTATCAGAGGCTTCCACTTCCAAAGTGATGGTC 205 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || ||||| |||||||||||||||||||| Sbjct 204 TTCCCCGTCAAGGTTTTTACGAAAATTTGCAT 173 Score = 100 bits (110), Expect = 3e-16 Identities = 116/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || |||| || || || ||||||||||| ||||| | || || ||| | ||| Sbjct 156 AGCACAAGGTGAAGGGTTGACTCCTTTTGAATGTTATAATCGGAGAGTGTACGCCCATCT 97 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| ||||| || || |||| || ||||| || || || ||||||||||| || || Sbjct 96 TCAAGTTGCTTTCCTGCGAAAATAAGACGCTGTTGATCAGGTGGAATTCCTTCCTTGTCC 37 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCA 64384 || | |||| ||||| ||| ||| | |||||| Sbjct 36 TG-AATTTTCGCTTTCACATTCTCAATGGTATCA 4 >seq182 Length=3864254 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | ||||| || || || ||||||||||| | | ||||| | ||| Sbjct 2229612 AGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCT 2229553 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | ||||||| ||||||||| || || || ||||| || || Sbjct 2229552 TCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCC 2229493 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || |||| || ||||| || | || | |||| Sbjct 2229492 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 2229433 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| ||||| || || ||||| || |||||||| Sbjct 2229432 TTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTT 2229398 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | ||||| || || || ||||||||||| | | ||||| | ||| Sbjct 2229840 AGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 2229781 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | ||||||| ||||||||| ||||| || ||||| || || Sbjct 2229780 TCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCC 2229721 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || || | || ||||| || | || | |||| Sbjct 2229720 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 2229661 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| || || ||||| || ||||| Sbjct 2229660 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2229629 >seq103000 Length=415 Score = 105 bits (116), Expect = 7e-18 Identities = 125/167 (75%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 64279 GGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAAT 64338 ||| || ||||||| || |||||||||||| |||| || |||||||| || || || || Sbjct 11 GGTACGGCCGTCTTCTAGTTGCTTGCCGGCAAAAATAAGTCGCTGCTGATCTGGTGGGAT 70 Query 64339 TCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTT 64397 |||||| || ||||| | |||| ||||| ||| ||| | ||| || ||| || |||| Sbjct 71 TCCTTCCTTGTCTTG-AATTTTGGCTTTCACATTCTCGATTGTGTCTGAGGCCTCGACTT 129 Query 64398 CTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 | | ||| | || || || |||| ||| || || || || |||||| Sbjct 130 CAAGAGTGATTGTTTTTCCAGTCAGAGTCTTCACAAAGATCTGCATT 176 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || |||||||| || || |||||||| | | ||||| | ||| Sbjct 192 AGAACAAGGTGAAGAGTTGATTCTTTCTGGATATTGTAATCAGAAAGAGTGCGTCCATCT 251 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | |||||| |||||| | || ||||| ||||| || || || ||||||||||| ||| Sbjct 252 TCCAACTGCTTTCCGGCAAAGATTAGCCGTTGCTGATCCGGTGGGATTCCTTCTTTGTCT 311 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| ||| || | || || ||| || || || | || | || Sbjct 312 TGAATCTTTGCCTTCACATTTTCAATGGTGTCGGAGGCCTCAACCTCGAGTGTAATTGTT 371 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| | ||||| || || || ||||| Sbjct 372 TTCCCGGTTAGGGTTTTCACAAAGATCTGCAT 403 >seq98 Length=6767347 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 ||||| ||||| || || ||| | || | || ||||||||| || || || || |||||| Sbjct 4449256 TCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTT 4449197 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 ||||| || || ||| ||| || | || |||| || ||||| || | || | | Sbjct 4449196 TCTTGGATCTTCCCCTTGACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 4449137 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| || ||||| || || ||||| || |||||| Sbjct 4449136 GTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATT 4449101 >seq299 Length=1488728 Score = 86.0 bits (94), Expect = 6e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || |||||||| || | | ||||||| | ||||| ||||| || || Sbjct 453132 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCA 453191 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || ||||||||| ||| | || || ||||||||||| || | ||| Sbjct 453192 GCAAAGATCAACCTCTGCTGGTCTGGAAGGATGCCCTCTTTTTCTTGGATCGTCCCCTTG 453251 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 ||| || | || |||| || ||||| || | || | |||||| Sbjct 453252 ACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 453298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497916497409000