Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq150 109 5e-19 seq260794 100 3e-16 seq182 93.3 4e-14 seq103000 86.0 6e-12 >seq150 Length=4498840 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||| || || | || ||||| || ||||||||||| || || ||||| ||| || Sbjct 34198 CACTAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGACAGAGTGCGGCCATCCTC 34257 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||||||| || | | |||| | ||||||||| || || |||||||||||||| Sbjct 34258 TAGCTGTTTGCCCACAAAAATCAGACACTGCTGATCAGGTGGGATGCCCTCCTTGTCTTG 34317 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 |||||| |||| | || | |||||| | ||| || |||| ||| | || || Sbjct 34318 GATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTT 34377 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| ||||| || || ||||| |||||||| Sbjct 34378 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 34407 >seq260794 Length=213 Score = 100 bits (110), Expect = 3e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| |||| ||| | |||| || | ||||||||||| || || ||||||||| Sbjct 31 TCCACCACGTAGTCGGAGAACCAGGTGGAGAGTAGACTCTTTCTGGATGTTGTAATCGGA 90 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||| ||| || || ||||| ||||| |||||| |||||||||||| || || Sbjct 91 CAAAGTGCGTCCATCTTCGAGTTGTTTGCCAGCAAAGATCAGTCGCTGCTGATCTGGGGG 150 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTC 127053 || || || |||||| ||| || ||| | | ||| | |||||| Sbjct 151 GATTCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTC 198 >seq182 Length=3864254 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||| ||| | || ||||| || || || |||||||| | ||||| ||| || Sbjct 2229837 ACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 2229778 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || || ||| |||| | | |||||| || ||||| ||||| ||||| ||| | Sbjct 2229777 AGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGG 2229718 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||| | | |||| |||||| | ||| || || | ||| | || ||| Sbjct 2229717 ATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTG 2229658 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||| || || || || |||||||| Sbjct 2229657 CCGGTCAGGGTCTTCACGAAGATCTGCAT 2229629 >seq103000 Length=415 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||| || ||||||||||| | ||||| ||| || | ||| ||||| Sbjct 207 GTTGATTCTTTCTGGATATTGTAATCAGAAAGAGTGCGTCCATCTTCCAACTGCTTTCCG 266 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTT 127035 || |||| | || |||||||| || || || || || |||| | ||| | | || ||| Sbjct 267 GCAAAGATTAGCCGTTGCTGATCCGGTGGGATTCCTTCTTTGT-CTTGAATCTTTGCCTT 325 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | ||| | |||||| | ||| || |||| || | ||||| ||||| || || Sbjct 326 CACATTTTCAATGGTGTCGGAGGCCTCAACCTCGAGTGTAATTGTTTTCCCGGTTAGGGT 385 Query 127096 TTTTACAAAAATCTGCATG 127114 ||| ||||| ||||||||| Sbjct 386 TTTCACAAAGATCTGCATG 404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473856013014000