Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq14 163 4e-35 >seq14 Length=17206968 Score = 163 bits (180), Expect = 4e-35 Identities = 219/302 (73%), Gaps = 2/302 (1%) Strand=Plus/Minus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | ||| | || || ||||| || |||||||| || ||||| |||||||| | Sbjct 6322431 AACACTGAATGAGGTAAAAGGACAGCCTTTCACATTATTGCAGATGAGAGACTGAATTGA 6322372 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || || || | ||| | |||||||| || || || || |||||||| ||||||||| | Sbjct 6322371 GGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTGGGCTTCCAGTACTC 6322312 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGC-TCGA 9053 || || || || || |||| || ||||||||||| || || | | ||||| || | Sbjct 6322311 AGGAGAACATATAGGATTACCCATCAGTCCTTTCAAGGAGAATGGTG-CTCCAGCTTCTA 6322253 Query 9054 TGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGA 9113 ||| |||| || ||||||||| | ||||| || ||||| || | | | ||| || | Sbjct 6322252 CCATGGTCTCCCCAAAGATGGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATACA 6322193 Query 9114 GTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCAC 9173 |||| | | || | ||| |||||||| ||||| ||||| ||||| || |||||||| | Sbjct 6322192 GTTCCATGACATCAATGTCACCATAGAGTGCTTCTAACTCTGCAGCCATTTCCTTCTCTC 6322133 Query 9174 CT 9175 || Sbjct 6322132 CT 6322131 Score = 147 bits (162), Expect = 3e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || |||||| |||| ||| ||||||| || || || || || || ||||| || || Sbjct 6320914 GTCTGGAACAACCGCTCATCATCCCATTCTGGATGCTCCTGCTTCAGCACATCACACACT 6320855 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||||||||| | |||||| || |||||||||||||| | ||| ||||| | |||||| Sbjct 6320854 CTGTTGTGTTCCCGCAGCCAGATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 6320795 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 | || | |||||| ||||| |||| | || || || | || | || | ||| | Sbjct 6320794 AGCTCCTGCCCCACAGCAAACTGCAGGTGTTCAGGAACATGAGGAGGGTAGATCATCTCG 6320735 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCT 9967 ||||| || |||||||| || || ||||||| || || |||| |||| Sbjct 6320734 ACCTGAGTATCTTTGACTGTTGGAGGATACACCTCTCCACCAATTACCT 6320686 Score = 104 bits (114), Expect = 3e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| || |||| | |||||||| ||||||||| ||| ||| | || Sbjct 6319816 TCTTACCCCATGGTTCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 6319757 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || || ||||||| || |||||||||||||| Sbjct 6319756 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 6319697 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 ||||| || | || | | || | ||| ||||||| | | ||||||| || || Sbjct 6319696 AGGGATGAACTTTCTTCTCAGAAGTAATTTTTCCACAACTTCTTTTGAATCAGGAAG 6319640 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | || || |||||||| || || ||||| |||| ||| ||| Sbjct 6319300 TCACCTTTCACACCCATGGGTGTTGGGCAGTCGTCAGCCACAGGAGGAAGAGCTCTTGTA 6319241 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| ||||| ||||| ||||||||||| || |||||||| | | || || Sbjct 6319240 TAATAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTGTGCATTATAAGTT 6319181 Query 10507 GGGGGACTGTCAATCA 10522 || || |||||||||| Sbjct 6319180 GGTGGGCTGTCAATCA 6319165 Score = 89.7 bits (98), Expect = 7e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || ||||||| | |||| || || || || ||||| || ||| ||| | Sbjct 6318191 CTTACGTGTTGAACAGTTTTCACCATAGAATCCTGTTCGGGTACAGTCACACTTATACTG 6318132 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 ||||| || | |||| ||||| |||||||||||||| |||| ||||||||||| || Sbjct 6318131 GTCAAATCCTATGCTCATACATACACCTCGATTCTGGCATGGGTTGGAACAGCAAGGATT 6318072 Query 10960 GGCTGCAAT 10968 ||| |||| Sbjct 6318071 TGCTACAAT 6318063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 721224579615000