Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq39 87.8 3e-12 >seq39 Length=12483156 Score = 87.8 bits (96), Expect = 3e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976 ||| ||||| | |||||| || ||||||| || || || || || || ||||| Sbjct 4321436 CCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAATTAGGCTCAGCAATATGTATGTT 4321377 Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCT 204035 || |||||||||||| || |||||| ||||| | || || ||||| |||| | ||| | Sbjct 4321376 CAAAGACTGGCTTTGATCAATGAAA-GCGCCTCTCTCAGCTGCCATCTTGAGTACGGTTT 4321318 Query 204036 TCTGCGAAATCTCCCACACCGTCTT 204060 |||| || || |||||||| ||||| Sbjct 4321317 TCTGAGAGATTTCCCACACAGTCTT 4321293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 792404708466000