Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq83363 152 1e-31 seq182 143 6e-29 seq103000 138 3e-27 seq103970 129 1e-24 seq260794 114 3e-20 seq299 107 5e-18 >seq83363 Length=456 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| || || |||||||||| ||||||||||| | || | ||||||| Sbjct 384 AGAACAAGATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGTCCATCT 325 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| |||||||| ||||||||||||||||| || || ||||||||| || Sbjct 324 TCAAGCTGTTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGGAATTCCTTCCTTGTCT 265 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||| || |||||| |||| || || | | ||| || ||||| ||||| ||| Sbjct 264 TGAATTTTCGCCTTCACATTCTCGATTGTATCAGAGGCTTCCACTTCCAAAGTGATGGTC 205 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| | ||||| || |||||||| Sbjct 204 TTCCCCGTCAAGGTTTTTACGAAAATTTG 176 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/144 (75%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | || |||||||| || || ||||||||||| | ||| || || | | || Sbjct 166 TCGAAGACGGAGCACAAGGTGAAGGGTTGACTCCTTTTGAATGTTATAATCGGAGAGTGT 107 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||| || |||||||| ||||| || |||||||| || || || |||||| Sbjct 106 ACGCCCATCTTCAAGTTGCTTTCCTGCGAAAATAAGACGCTGTTGATCAGGTGGAATTCC 47 Query 199528 TTCTCGCTCCTGAATCTTTTGCTT 199551 ||| |||||||| ||| |||| Sbjct 46 TTCCTTGTCCTGAAT-TTTCGCTT 24 >seq182 Length=3864254 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || || ||||||||||| |||| |||||| |||| | ||| | |||||| Sbjct 2229840 AGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 2229781 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || ||||||||||| | ||||||||| ||| || ||||| ||| Sbjct 2229780 TCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCC 2229721 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| |||||| | | || || |||| ||||| ||| Sbjct 2229720 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 2229661 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 2229660 TTGCCGGTCAGGGTCTTCACGAAGATCTG 2229632 Score = 136 bits (150), Expect = 9e-27 Identities = 162/219 (74%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| || || || ||||||||||| |||| |||||| || | | ||| | ||||| Sbjct 2229613 CAGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATC 2229554 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || ||||||||||| | ||||||||| || || ||||| || Sbjct 2229553 TTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATC 2229494 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| |||| |||||| | | || || |||| ||||| || Sbjct 2229493 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 2229434 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||| ||||| | || ||||| || || || |||||| Sbjct 2229433 CTTGCCCGTCAAGGTCTTCACGAAGATCTG---CATTTT 2229398 >seq103000 Length=415 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | || |||||||| ||||| || || || |||| ||||| |||| | ||| Sbjct 182 TCGAAGACGGAGAACAAGGTGAAGAGTTGATTCTTTCTGGATATTGTAATCAGAAAGAGT 241 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||||||||| |||||||||||| ||||| || || ||||| ||||| ||||| Sbjct 242 GCGTCCATCTTCCAACTGCTTTCCGGCAAAGATTAGCCGTTGCTGATCCGGTGGGATTCC 301 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || ||||||||| |||||| ||| | |||||| | | || || || | Sbjct 302 TTCTTTGTCTTGAATCTTTGCCTTCACATTTTCAATGGTGTCGGAGGCCTCAACCTCGAG 361 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || ||||||||||| || || Sbjct 362 TGTAATTGTTTTCCCGGTTAGGGTTTTCACAAAGATCTG 400 Score = 102 bits (112), Expect = 2e-16 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||| |||||||||||||||||||||||| | ||| | | |||||||| ||||| Sbjct 277 CTAATCTTTGCCGGAAAGCAGTTGGAAGATGGACGCACTCTTTCTGATTACAATATCCAG 218 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 ||||| || ||||||||||||||| | | |||||| Sbjct 217 AAAGAATCAACTCTTCACCTTGTTCTCCGTCTTCGA 182 >seq103970 Length=412 Score = 129 bits (142), Expect = 1e-24 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || |||||||| ||||| |||||||| |||| |||||| || | || ||| Sbjct 189 CGAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAGAGTT 130 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||| ||||||||||||||||| ||||||||||| || ||| |||||| Sbjct 129 CGGCCATCCTCCAATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGAGGGATTCCT 70 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| |||||| |||| |||||| | | || || || | Sbjct 69 TCCTTATCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCAGAGGCCTCAACCTCGAGA 10 Query 199589 GTGATCGTC 199597 ||||| ||| Sbjct 9 GTGATGGTC 1 Score = 105 bits (116), Expect = 2e-17 Identities = 73/83 (88%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 |||||||||||||||||||| ||||| ||||| | ||| || ||||||||||| ||||| Sbjct 95 CTTATCTTCGCCGGAAAGCAATTGGAGGATGGCCGAACTCTGTCCGATTACAACATCCAG 154 Query 200995 AAAGAGTCTACTCTTCACCTTGT 201017 || ||||| |||||||||||||| Sbjct 155 AAGGAGTCCACTCTTCACCTTGT 177 >seq260794 Length=213 Score = 114 bits (126), Expect = 3e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| || || ||||||||||| ||||| || |||| |||||| || | |||||| Sbjct 38 CGTAGTCGGAGAACCAGGTGGAGAGTAGACTCTTTCTGGATGTTGTAATCGGACAAAGTG 97 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||| || || || || || ||||| || |||||||| || || |||||| Sbjct 98 CGTCCATCTTCGAGTTGTTTGCCAGCAAAGATCAGTCGCTGCTGATCTGGGGGGATTCCT 157 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 ||| ||||| ||||| ||||||| ||| | |||||| Sbjct 158 TCTTTGTCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTC 198 Score = 93.3 bits (102), Expect = 1e-13 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 200934 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 200993 ||| ||||| || || || || | ||||||||| | |||||| ||||||||||| |||| Sbjct 133 ACTGATCTTTGCTGGCAAACAACTCGAAGATGGACGCACTTTGTCCGATTACAACATCCA 74 Query 200994 GAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||||||||||||||| ||||| ||| | |||| || Sbjct 73 GAAAGAGTCTACTCTCCACCTGGTTCTCCGACTACG 38 >seq299 Length=1488728 Score = 107 bits (118), Expect = 5e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| | ||| ||||| || ||||| |||| ||||||||||| || || | ||||| Sbjct 453116 CAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 453175 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || || || ||||| | | ||||||||| |||| || || ||| || Sbjct 453176 TTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGAAGGATGCCCTCTTTTTC 453235 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||| | ||| || ||||| |||||| | | || || |||| ||||| || Sbjct 453236 TTGGATCGTCCCCTTGACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 453295 Query 199597 CTTA 199600 |||| Sbjct 453296 CTTA 453299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1174741687415575