Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq182 141 1e-28 seq150 107 2e-18 seq83363 89.7 6e-13 seq584 89.7 6e-13 >seq182 Length=3864254 Score = 141 bits (156), Expect = 1e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || | ||||| |||||||||| || |||||| ||||| ||||| ||||| Sbjct 2229627 CCACCCCTCAGACGCAGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGGAA 2229568 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || ||||||||||| ||||| || | | ||||||||| | || Sbjct 2229567 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGGGGG 2229508 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||| ||| |||||| ||| | || | | ||||| || | ||||| Sbjct 2229507 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 2229448 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| |||||||| |||||||||| || || || ||||| ||||||||| Sbjct 2229447 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTTG 2229397 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | ||| | |||||||||| || |||||| ||||| ||||| || || Sbjct 2229856 GCCACCCCTCAGACGGAGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGA 2229797 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||| | || || ||||||||||| ||||| || | | ||||||||| | || Sbjct 2229796 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGG 2229737 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || ||||| ||| |||||| ||| | || | | |||||||| | ||||| Sbjct 2229736 GATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCAC 2229677 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 2229676 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2229629 >seq150 Length=4498840 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || ||||||||||| || |||||||| | || || ||||| ||||| | || Sbjct 34216 CTCCTTCTGAATATTGTAGTCTGACAGAGTGCGGCCATCCTCTAGCTGTTTGCCCACAAA 34275 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | |||||| || | || | || ||||||||| ||| || |||| | Sbjct 34276 AATCAGACACTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATT 34335 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || | || || || | |||||||| ||||||||||| || || || Sbjct 34336 CTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 34395 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 34396 AAAGATCTGCAT 34407 >seq83363 Length=456 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||| | ||| | || ||||| | || ||||||||||| |||||||| || Sbjct 399 CCTCCTCGGAGACGGAGAACAAGATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAG 340 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || ||||| || ||||| || || | |||||||| || | || Sbjct 339 AGGGTACGTCCATCTTCAAGCTGTTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGGA 280 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||| || ||| ||| | || | | || || | |||||| Sbjct 279 ATTCCTTCCTTGTCTTGAATTTTCGCCTTCACATTCTCGATTGTATCAGAGGCTTCCACT 220 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| || ||||||| ||||| || || |||||||| Sbjct 219 TCCAAAGTGATGGTCTTCCCCGTCAAGGTTTTTACGAAAATTTGCAT 173 >seq584 Length=118070 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| |||| | | | | ||||| ||||| || ||| || || ||||||||||| | Sbjct 48967 TGCCACCTCGCAGATGAAGCACCAAGTGCAAGGTGGACTCATTCTGAATATTGTAGTCTG 49026 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | | || || ||||| |||| | || |||| |||||||||| | | Sbjct 49027 ATGGAGTGTGGCCATCCTCCAGCTGTTTGCTCACAAAAATCAGATGCTGCTGGTCAGGTG 49086 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| ||| || |||| || | | |||| || | | | Sbjct 49087 GGATGCCCTCCTTGTCTTGGATTTTAACTTTGACATTCTCAATGATGTCACTGGGCTTAA 49146 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||| |||| || || |||||||| ||||| Sbjct 49147 CCTCAAGGGTGATGGTCTTGCCTATCAGGGTCTTCACAAAGATCTGCAT 49195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563283205047000