Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq103000 96.9 2e-15 seq83363 87.8 1e-12 >seq103000 Length=415 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | ||| || || | || | ||| |||||| || ||||| ||||| | Sbjct 177 CCTCCTCGAAGACGGAGAACAAGGTGAAGAGTTGATTCTTTCTGGATATTGTAATCAGAA 236 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | |||| |||| ||||| || || ||| |||| |||| || |||||||||| || Sbjct 237 AGAGTGCGTCCATCTTCCAACTGCTTTCCGGCAAAGATTAGCCGTTGCTGATCCGGTGGG 296 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| || ||| || | | | | ||||| | | || || Sbjct 297 ATTCCTTCTTTGTCTTGAATCTTTGCCTTCACATTTTCAATGGTGTCGGAGGCCTCAACC 356 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | ||||||||||| || |||| ||||| || |||||||||||| Sbjct 357 TCGAGTGTAATTGTTTTCCCGGTTAGGGTTTTCACAAAGATCTGCATG 404 >seq83363 Length=456 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | ||| || || | ||| | || ||| ||||| || || || || | Sbjct 399 CCTCCTCGGAGACGGAGAACAAGATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAG 340 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || | ||||| ||| |||| || | |||||||||||| | || Sbjct 339 AGGGTACGTCCATCTTCAAGCTGTTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGGA 280 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| ||||| ||||| || | || | | ||| || | | |||||| Sbjct 279 ATTCCTTCCTTGTCTTGAATTTTCGCCTTCACATTCTCGATTGTATCAGAGGCTTCCACT 220 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 |||||||| || || || ||||| || ||||||||||| || |||||| Sbjct 219 TCCAAAGTGATGGTCTTCCCCGTCAAGGTTTTTACGAAAATTTGCATG 172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346198066171925