Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq182 143 3e-29 seq150 120 3e-22 seq83363 116 4e-21 seq299 104 2e-17 seq312 98.7 1e-15 seq584 95.1 1e-14 seq180 91.5 1e-13 seq24 89.7 5e-13 seq4 82.4 8e-11 >seq182 Length=3864254 Score = 143 bits (158), Expect = 3e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || | |||||||| ||||||||| | || || ||| || Sbjct 2229398 AAAATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCC 2229457 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | || | || |||| || || || || || ||| | || Sbjct 2229458 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGA 2229516 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| ||||||| | ||| ||||| |||||||| || | ||||| || ||| || Sbjct 2229517 CCAGCAGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCCGATTA 2229576 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| |||| |||||| |||| |||||| |||| || || Sbjct 2229577 CAACATCCAGAAGGAGTCGACCCTGCATCTGGTCCTGCGTCTGAGGGGTGG 2229627 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| | Sbjct 2229629 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 2229688 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || || || | ||||| Sbjct 2229689 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCA 2229747 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | ||| ||||| |||||||| || | ||||| || || ||||| Sbjct 2229748 GCAGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 2229807 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| |||| |||||| |||| || ||| |||| || ||| Sbjct 2229808 CATCCAGAAGGAGTCGACCCTGCATCTGGTCCTCCGTCTGAGGGGTGGC 2229856 >seq150 Length=4498840 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| ||||||||| |||| || ||| ||| Sbjct 34407 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 34348 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| ||||||| ||||| ||||| || || | || || Sbjct 34347 GACACCATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGATCAG 34288 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | || |||| | |||||||||||| || || | ||||| || |||||||| Sbjct 34287 CAGTGTCTGATTTTTGTGGGCAAACAGCTAGAGGATGGCCGCACTCTGTCAGACTACAAT 34228 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 || || ||||| | || ||||| || |||| | | || ||||||||| Sbjct 34227 ATTCAGAAGGAGTCCACCCTGCACTTAGTGCGTCATCTGTGAGGCGGCC 34179 >seq83363 Length=456 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||||||||| | ||||| || |||||||| | || || || ||| | Sbjct 173 ATGCAAATTTTCGTAAAAACCTTGACGGGGAAGACCATCACTTTGGAAGTGGAAGCCTCT 232 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || | ||||| | ||||| || |||||||| | || || Sbjct 233 GATACAATCGAGAATGTGAAGGCGAAAATTCAAGACAAGGAAGGAATTCCACCAGATCAG 292 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | || || |||||||| || || | || |||||| ||||||||| Sbjct 293 CAGCGTCTCATCTTTGCCGGAAAACAGCTTGAAGATGGACGTACCCTCTCTGACTACAAC 352 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || ||| | || || ||| | |||| || Sbjct 353 ATCCAAAAGGAATCAACCCTCCATCTTGTTCTCCGTCTCCGAGGAGG 399 >seq299 Length=1488728 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 38274 AAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATC 38333 || ||||||||| | || || ||| ||| |||| | | ||| | || | | ||| Sbjct 453298 AAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAAAATGTCAAGGGGACGATC 453239 Query 38334 CTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTG 38393 | || |||||||| || | | ||||| ||| || | || | || || ||||||||| Sbjct 453238 CAAGAAAAAGAGGGCATCCTTCCAGACCAGCAGAGGTTGATCTTTGCTGGGAAACAGCTG 453179 Query 38394 GACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTG 38453 || || | ||||||||| |||||||||||||| |||||| | || ||||| ||||| Sbjct 453178 GAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAATCCACTCTGCACTTGGTC 453119 Query 38454 CTGCGTTTGAGAGGCGG 38470 ||||| || || || || Sbjct 453118 CTGCGCTTAAGGGGAGG 453102 >seq312 Length=1320911 Score = 98.7 bits (108), Expect = 1e-15 Identities = 165/230 (72%), Gaps = 9/230 (4%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| |||||||| || | || ||| ||| Sbjct 1167378 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGGCCATCACCCTC-AGGTTGAGCCCAGT 1167320 Query 38304 GACAGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | || || | | |||| |||| || ||||| ||||| || |||||| |||| Sbjct 1167319 GACACCACTGAGAATG-TCAAAGCTAAAACCCAAGACAAGGAGGGCAT-CCCGCCTGACC 1167262 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || |||| | ||||||||||||||| ||| | ||| || |||||| Sbjct 1167261 AGCAGCGTCTGATTTTTGTGGGCAAACAGCTGGAGGACAGGGACACTCTGTCACACTACA 1167202 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| |||| | | ||||| |||||||| || || |||||||| Sbjct 1167201 GTATCC---AGGAGTCCGCCCTGCACTTGGTGCT-TGTCTGCGAGGCGGC 1167156 >seq584 Length=118070 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || | ||||| ||||||||| | || || || ||| Sbjct 49195 ATGCAGATCTTTGTGAAGACCCTGATAGGCAAGACCATCACCCTTGAGGTTAAGCCCAGT 49136 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| ||||||| ||||| ||||| || || | ||||| Sbjct 49135 GACATCATTGAGAATGTCAAAGTTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 49076 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC-GACTACAA 38422 |||| || |||| | | ||||||||||||| || | | ||| | || | |||||||| Sbjct 49075 CAGCATCTGATTTTTGTGAGCAAACAGCTGGAGGATGGCCACACTC-CATCAGACTACAA 49017 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || || || | || |||| |||||||| | | || |||| ||| Sbjct 49016 TATTCAGAATGAGTCCACCTTGCACTTGGTGCTTCATCTGCGAGGTGGC 48968 >seq180 Length=3735678 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | |||||| | ||||||||| |||| || ||| |||| Sbjct 1580496 ATGCAGATTTTTGTGAAGACCCCGACGGGCCAGACCATCACCCTCGAGGTTGAGTCCACT 1580437 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| |||||| ||||| |||| || | | ||||| Sbjct 1580436 GACACTGATAAGAATGTCAAAGCTAAAATCTAAGACAAGGAGGTCATCTCACCTGACCAG 1580377 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 |||| || |||| | |||| ||||||||||| || | ||||| || |||||| | Sbjct 1580376 CAGCATCTGATTTTCACGGGGAAACAGCTGGAGGATGGCCGCACTCTGTCAGACTACGAT 1580317 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 | || || || | || |||| | ||||| ||| || |||||||| Sbjct 1580316 GTTCAGAAAGAGTCCACCTTGCACTCAGTGCTTCGTCTGGGAGGCGGC 1580269 >seq24 Length=14023012 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/211 (71%), Gaps = 7/211 (3%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG-TGCAAACGCTTAA 38323 || |||||||| ||| ||||| |||| || ||| || |||| | || || | | | Sbjct 9383911 CTGACGGGCAAGACCCTCACCCTCGAGGTTGAGCCCTGTGACACCACTGAGAATG-TCAG 9383853 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || |||||| ||||||||||| || || | ||||| ||||| || | || |||||| Sbjct 9383852 AGCTAAAATCAAAGACAAAGAGGGCATCCCACCTGACCAGCAGCGTCTGAGTTTCGCGGG 9383793 Query 38384 CAAACAGCTGGACGACGAGCGCACCC--TCAACGACTACAACATCCAAAAGGAAGC-GAC 38440 | |||||||||| || | ||||||| ||| |||||||| || || || | | Sbjct 9383792 CGAACAGCTGGATGAGGGCCGCACCCCGTCA--GACTACAATATTCAGGAGTCCTCTTTC 9383735 Query 38441 GCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| |||||||| ||| || |||| || Sbjct 9383734 CCTGCACTTGGTGCTTCGTCTGCAAGGCAGC 9383704 >seq4 Length=22931326 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 133396 ACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAA 133455 |||||||| | |||||||| || ||||| ||||| || ||||| ||| || || | Sbjct 4283775 ACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATTTGCCAAATATCATGA 4283716 Query 133456 TATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508 |||| || ||||| || ||||| |||||||||||||| | || || ||||| Sbjct 4283715 TATTCGATAGGAAAGATGACAAAGCGGCGGGGGTTTTCTCTCAGAAGTGGCTC 4283663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498442671024000