Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq50770 163 1e-34 seq8532 161 4e-34 seq135 138 4e-27 seq83363 122 3e-22 seq211 116 1e-20 seq53 100 1e-15 seq374 98.7 4e-15 seq81 95.1 5e-14 seq103970 93.3 2e-13 seq103000 89.7 2e-12 >seq50770 Length=559 Score = 163 bits (180), Expect = 1e-34 Identities = 370/548 (68%), Gaps = 15/548 (3%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 ||| | |||||||||||||| ||||| | ||| ||||| ||||| | | | ||||| Sbjct 17 GCAGTCGGAATTGATCTTGGCACCACGTATTCGTGTGTGGGTGTCTTCATGCACGGAAAA 76 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 || |||||||| || ||||| ||||| || || || ||||| | || || ||| Sbjct 77 GTGGAAATTATCGCCAATGATCAAGGTAACCGCACAACACCTTCCTATGTTGCATTCACG 136 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAAA 451091 || ||||| ||||| | || | || || || |||| | || ||| | | | Sbjct 137 GACACAGAACGACTTATTGGAGATGCCGCCAAGAATCAGGTGGCCATG--AATCCTCACA 194 Query 451092 ACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAA 451151 |||| |||| ||||| || || || ||||| || | | ||| ||| | || ||| Sbjct 195 ACACTGTATTCGATGCCAAGCGATTGATTGGACGCAAATTTGACGATCCAGCAGTCCAAT 254 Query 451152 AAGAGAAAAA--ATT--CTTTTCTTATGATGTAGTAAATCAAAAAGGA---AAGCCCTAT 451204 || | || ||| | ||| | | ||| || | | | || ||||| | Sbjct 255 CCGATATGAAGCATTGGCCATTCAAA-GTTGT-GTCAGCCGAG--GGCTCCAAGCCTAAG 310 Query 451205 ATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATG 451264 ||||||| | || || || ||||| ||| || | || || || || ||||| ||| Sbjct 311 GTTCAAGTCGAATACAAGGGCGAAACCAAAGTCTTCACCCCGGAGGAGATCTCATCAATG 370 Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||||| || || ||||| || || ||||| | |||| ||||| |||| ||||| Sbjct 371 GTTCTAACGAAGATGAAGGACACCGCAGAGGCTTTCCTTGGATCTCCTGTTAAGGATGCC 430 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || | || || || || || ||||| ||| | || || ||||| || |||||||| ||| Sbjct 431 GTCGTCACAGTGCCAGCCTACTTCAACGATTCCCAGCGTCAAGCCACCAAAGATGCTGGA 490 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 |||||||| | ||||||||||| || || |||||||| || || |||||| | || Sbjct 491 GCCATTGCTGGCCTGAATGTTCTTCGTATCATCAATGAACCAACTGCCGCTGCTATCGCC 550 Query 451445 TATGGACT 451452 || ||||| Sbjct 551 TACGGACT 558 >seq8532 Length=1223 Score = 161 bits (178), Expect = 4e-34 Identities = 237/335 (71%), Gaps = 9/335 (3%) Strand=Plus/Minus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 || ||||||||||| || ||| ||| |||| || | || |||| || |||||| Sbjct 861 AAGATGAAAGAAACTGCTGAAAGCTATCTTGGAACTACTGTACACAATGCTGTTATTACT 802 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 ||||| ||||| |||||||| |||| | || || || || ||||| ||||| |||||| Sbjct 801 GTTCCGGCTTACTTCAATGACTCACAGAGACAGGCTACGAAGGATGCGGGACAAATTGCT 742 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTA 451453 ||||||||||| || ||| | || || || || || || ||||| || || || || || Sbjct 741 GGTTTAAATGTCCTGCGAGTAATCAACGAGCCCACGGCTGCTGCCCTTGCCTACGG-CTT 683 Query 451454 GGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513 ||| | | |||| || |||| |||| || | ||| |||| || || ||| Sbjct 682 GGATA--------AGGCAGAGGATAAAATTATTGCTGTGTATGACCTTGGCGGTGGTACT 631 Query 451514 CATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGT 451573 ||||| ||| || | |||| || | || || || ||||| ||| ||||||||||| Sbjct 630 TTTGATATTTCCGTGTTGGAAATTCAAAAAGGAGTGTTCGAAGTTAAGTCAACCAATGGT 571 Query 451574 GATACTCATCTAGGAGGTGAAGATATTGATAATGC 451608 || ||| || || || |||||| | ||| |||| Sbjct 570 GACACTTTCCTCGGTGGAGAAGATTTCGATCATGC 536 >seq135 Length=4864652 Score = 138 bits (152), Expect = 4e-27 Identities = 453/694 (65%), Gaps = 15/694 (2%) Strand=Plus/Minus Query 450919 TGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTG-TTTACCAAAATGGAAATGTAG 450977 ||| ||||||||||| ||||||| ||| ||||| |||| ||| | | | || || |||| Sbjct 2807684 TGGCATTGATCTTGGCACCACCTATTCCTGTGTGGGTGATTTTCTAGCACGGGAAAGTAG 2807625 Query 450978 AAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGATT 451037 | || || || ||||| || ||| | ||| || || || | ||| || || Sbjct 2807624 AGATAATTGCCAATGATCAGGGAAATCCAACCACCCCAAGCTGTGCCGCTTTCACCCATA 2807565 Query 451038 CAGAAAGACTTTTAGGGCAA-GCTGCTAA-ATCAATGGTAAATTCAAATGCCAAAAACAC 451095 ||| || | | | | ||||| || | | | | | | | || ||| | ||| Sbjct 2807564 TCGAATGATTGATCGTTTGATGCTGCAAAGAACCAAGTTGAGATGAACC-CCACCAGCAC 2807506 Query 451096 AGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAGA 451155 ||| | |||||| ||| | | ||||| || | | |||| ||| | ||| ||| || Sbjct 2807505 AGTTTTTGATGCCAAATGCCTCATTGGACGAAGATTTGATTATGCTGTTGTCCAATCTGA 2807446 Query 451156 GAAAAA--ATT--CTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAG 451211 | || ||| | ||| ||| || || ||| | ||| | ||| | || |||| Sbjct 2807445 TACGAAGCATTGGCCCTTC--ATGGTG--GTGAATAACGCAGGCAGGCCTAAGATCCAAG 2807390 Query 451212 TAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTA 451271 |||| || || || || || |||| || ||| || || | ||||| ||||| | | Sbjct 2807389 TAAAATACAAGGGAGAGACAAAAAGCTTGTATCCAGAGGAGGTGTCATCCGTGGTTTTGA 2807330 Query 451272 CTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTA 451331 | || ||| | |||| |||||| || |||| | ||||| |||| | | | Sbjct 2807329 CAAAGATGGAGGAAATTGCAGAAGCCTACCTTGGGAAGACTGTTACCAATGCTGATGTCA 2807270 Query 451332 CTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTG 451391 || ||| ||||||||||||| | || | || || || |||||||| ||| ||||| Sbjct 2807269 GAGTACCCACTTATTTCAATGACTCTCAGTGTCAGGCTACCAAAGATGCTGGAAGTATTG 2807210 Query 451392 CTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGAC 451451 ||||| | ||||| ||| |||| |||||||| || || || |||||| | || |||| Sbjct 2807209 CTGGTCTCAATGTACTTAGAATCATTAATGAGCCAACTGCTGCTGCTGTTGCTAATGGCT 2807150 Query 451452 TAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAA 451511 ||| || ||| | || |||| |||| | | | ||||| || ||||| || | Sbjct 2807149 TAGACAA---AAAGGTTGGAGCTGAAAGAAATGTGCTGATCTTTGACTTGGGTGGTGGCA 2807093 Query 451512 CTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATG 451571 || |||| | | ||| | ||||| ||||| | ||||| || || | || | | Sbjct 2807092 CTTTTGATGTGCCAATCCTTACTATTGAGGATGGAATCTTTGATGTCAAATCTACTACCG 2807033 Query 451572 GTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 | ||||| || ||||| || || || |||| || Sbjct 2807032 GAGATACCCACCTAGGTGGAGAGGACTTTGACAA 2806999 >seq83363 Length=456 Score = 122 bits (134), Expect = 3e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 ||||||| |||||| | | ||| |||||||| || |||||||||||||| |||||| Sbjct 2 TCTGATACCATTGAGAATGTGAAAGCGAAAATTCAGGACAAGGAAGGAATTCCACCTGAT 61 Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTAT 391226 ||||| ||| | |||||| |||| || |||||||||||||| | || | | |||||| Sbjct 62 CAACAGCGTCTTATTTTCGCAGGAAAGCAACTTGAAGATGGGCGTACACTCTCCGATTAT 121 Query 391227 AATATTGATAAGGATGCAACACTTCAC 391253 || ||| | ||||| |||| |||||| Sbjct 122 AACATTCAAAAGGAGTCAACCCTTCAC 148 Score = 105 bits (116), Expect = 3e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| |||| || || || || ||| | || || ||| | ||| Sbjct 173 ATGCAAATTTTCGTAAAAACCTTGACGGGGAAGACCATCACTTTGGAAGTGGAAGCCTCT 232 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | | || ||||||||||| |||||||||||||| || ||||| Sbjct 233 GATACAATCGAGAATGTGAAGGCGAAAATTCAAGACAAGGAAGGAATTCCACCAGATCAG 292 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | || ||||| |||||||||||| | || | | || || || Sbjct 293 CAGCGTCTCATCTTTGCCGGAAAACAGCTTGAAGATGGACGTACCCTCTCTGACTACAAC 352 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| |||| || || Sbjct 353 ATCCAAAAGGAATCAACCCTCCA 375 >seq211 Length=2993106 Score = 116 bits (128), Expect = 1e-20 Identities = 251/373 (67%), Gaps = 2/373 (1%) Strand=Plus/Minus Query 451091 AACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAA 451150 ||||| || | |||||| |||||| | |||||| | | | | ||||| | || ||| Sbjct 2469919 AACACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAATTTAATGATCCTGTAGTGCAA 2469860 Query 451151 AAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAA 451210 ||| | ||| | | ||| | | ||| | ||| || ||| |||||| | | Sbjct 2469859 TCAGATATGAAACTTTGGCCTTTTCAAGTAATCAATGAAGGAGGCAAGCCCAAGGTAATG 2469800 Query 451211 GTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTT 451270 || || ||||| || | ||| |||| ||||| ||||| || |||||||| || Sbjct 2469799 GTGTCCTACAAAGGGGAGAAAAAAGCTTTCTACCCTGAGGAAATCTCTTCTATGGTACTG 2469740 Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTC-CAGTTACTGATGCAGTAAT 451329 ||||| ||||| || || || || | | |||| | | | || || |||| || || Sbjct 2469739 ACTAAGATGAAGGAGACTGCTGAGGCTTTT-TTGGGCCACACTGTCACCAATGCTGTGAT 2469681 Query 451330 TACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATAT 451389 || || || || ||||||||||| | || || || || || || |||||||| || Sbjct 2469680 CACCGTGCCAGCCTATTTCAATGACTCTCAGCGCCAGGCCACCAAGGATGCAGGTGTGAT 2469621 Query 451390 TGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 ||| ||| | || || || ||||||| || ||||| ||||| ||||| | || ||||| Sbjct 2469620 TGCAGGTCTCAACGTGCTAAGAATTATCAACGAACCCACAGCTGCTGCCATTGCTTATGG 2469561 Query 451450 ACTAGGAAAATCA 451462 ||| ||| || Sbjct 2469560 CTTAGATAAAGCA 2469548 >seq53 Length=10547686 Score = 100 bits (110), Expect = 1e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| ||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 4911432 GTTACTCATGCAGTTGTTACTGTACCTGCCTATTTCAATGATGCCCAACGCCAGGCAACC 4911491 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 ||||| || ||| ||||||||| || |||||| | | || || ||||| || Sbjct 4911492 AAAGACGCTGGAACTATTGCTGGATTGAATGTTATGAGGATCATCAATGAGCC 4911544 >seq374 Length=747316 Score = 98.7 bits (108), Expect = 4e-15 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| ||||| ||||| ||||| || ||||| | ||| | | ||||| ||| |||| Sbjct 269612 GCAGTTATTACAGTTCCAGCTTACTTTAATGACCCTCAAAGAAAGTCAACTGAAGTTGCA 269671 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || ||||| || ||| ||||| | ||||| |||| ||||||||||| ||||| || Sbjct 269672 GGGAGAATTGCGGGATTAGATGTTGTAAGAATTGTTAACGAACCTACAGCTGCTGCATTA 269731 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501 || ||||| || | ||| ||| ||| | || | ||| || | || | ||| || Sbjct 269732 GCCTATGGTCTTG-----ACAAGAGAGACA-AGGACACAAAGATACTTGTTTATGACCTT 269785 Query 451502 GGTGGAGGAACTCATGATACTTCTGTACT 451530 |||||||| || |||| ||||| || Sbjct 269786 GGTGGAGGTACATTTGATGTCTCTGTGCT 269814 >seq81 Length=7601439 Score = 95.1 bits (104), Expect = 5e-14 Identities = 169/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106 |||||| | |||||||||||| || || || ||||| ||| || | || | || | Sbjct 2185123 TGCAATCTCTGGCACTAGGGGGTCATCTGGGTTTGGATCA--CATAGCAGTGAACAAATG 2185066 Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166 |||||||| |||||| ||| |||| || || ||| | | ||| |||||| | | Sbjct 2185065 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCAAGA 2185006 Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226 ||||| || || | ||||||||||||||||||| ||| ||||| || ||| Sbjct 2185005 CAAATGCTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTA 2184946 Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCA 96286 || || || | || |||||| ||||||| |||| || |||||| || || | | Sbjct 2184945 GGTGGTTTGAAGGGGTAGTCTGTAGGAAAATGAATTGTCAAAAAGAATACACCGCCTTGA 2184886 Query 96287 TAGGG 96291 || || Sbjct 2184885 TATGG 2184881 >seq103970 Length=412 Score = 93.3 bits (102), Expect = 2e-13 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 391083 ACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAACAAAAAATTCAA 391142 || || ||||| || ||||| | ||||| | ||| || | | || || ||||| Sbjct 2 ACCATCACTCTCGAGGTTGAGGCCTCTGACACCATCGAGAATGTGAAGGCCAAGATTCAG 61 Query 391143 GATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAA 391202 |||||||||||||| ||||||||||| || ||| | || ||| | || || ||| | || Sbjct 62 GATAAGGAAGGAATCCCTCCTGATCAGCAGCGTCTTATCTTCGCCGGAAAGCAATTGGAG 121 Query 391203 GATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCAC 391253 ||||| ||||| || | ||||| || || | ||||| | || |||||| Sbjct 122 GATGGCCGAACTCTGTCCGATTACAACATCCAGAAGGAGTCCACTCTTCAC 172 >seq103000 Length=415 Score = 89.7 bits (98), Expect = 2e-12 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || |||||||| ||||| || |||||||| || || | || Sbjct 176 AATGCAGATCTTTGTGAAGACTCTGACTGGAAAAACAATCACTCTTGAAGTCGAGGCCTC 117 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | || || | | ||| ||||||||||| ||||||||||| || || ||||| Sbjct 116 AGACACAATCGAGAATGTGAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCAGATCA 57 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGG 391207 || || | ||||| | || || ||||| ||||| || Sbjct 56 GCAGCGACTTATTTTTGCCGGCAAGCAACTAGAAGACGG 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1968713413236300