Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq374 82.4 9e-11 >seq374 Length=747316 Score = 82.4 bits (90), Expect = 9e-11 Identities = 191/287 (67%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGG---TTGATTTTCGCGAGCGACTTCAAAG 16121 ||||| ||||| |||||||| | |||||| || | | |||| | || ||||||| Sbjct 82724 GCATCTATCTCGTCAATGAAAATGATGCAAGGAGATAGTTTTTTG---GCTTTTTCAAAG 82668 Query 16122 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 16181 || |||| ||| | ||| || || |||||||||||||| || |||| ||| | || Sbjct 82667 AGCTCCCTTACTCTCTTAGCTCCTACACCAACAAACATGTCGTCAAAAGAAGCGCCTGAT 82608 Query 16182 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 16241 || || |||||| |||||||| || || | | || || ||||| || || || Sbjct 82607 GCTTCGAGGAAGGGCACATTAGACTCCCCTGATACCGCCTTAGCTAGAAGTGTTTTTCCA 82548 Query 16242 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTAT 16301 || || || ||| |||| ||||| || || || || | | |||| Sbjct 82547 GTCCCAGGAGGACCGTAAAGGATCACACCTTTAGGGATACGAGCACCCATCGCTGAGTAC 82488 Query 16302 CTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTTT 16348 | | |||| ||| ||||| || || ||||| || | ||| ||||| Sbjct 82487 TTTTTAGGTCTCTTGAGAAAGTCAACGATCTCCTCTAGTTCTTCTTT 82441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618595213242000