Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq103000 154 3e-32 seq83363 145 2e-29 seq182 143 6e-29 seq103970 131 4e-25 seq260794 129 1e-24 seq150 104 5e-17 seq584 87.8 4e-12 >seq103000 Length=415 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||||||||| || ||||| || ||||||||||| | |||||| | |||||||| Sbjct 194 AACAAGGTGAAGAGTTGATTCTTTCTGGATATTGTAATCAGAAAGAGTGCGTCCATCTTC 253 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | |||||| || || ||||| || ||||| || || || || || |||||||||||||| Sbjct 254 CAACTGCTTTCCGGCAAAGATTAGCCGTTGCTGATCCGGTGGGATTCCTTCTTTGTCTTG 313 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| ||| ||| || || ||||||||||| || || || || || |||| || || Sbjct 314 AATCTTTGCCTTCACATTTTCAATGGTGTCGGAGGCCTCAACCTCGAGTGTAATTGTTTT 373 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || || | ||||| Sbjct 374 CCCGGTTAGGGTTTTCACAAAGATCTGCAT 403 Score = 107 bits (118), Expect = 4e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 194968 TCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCT 195027 |||| ||| || | || ||||| || ||||| || || || |||||||| || || ||| Sbjct 3 TCGGAAAGGGTACGGCCGTCTTCTAGTTGCTTGCCGGCAAAAATAAGTCGCTGCTGATCT 62 Query 195028 GGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT 195087 || || || ||||| |||||||||||||| || || ||||| || ||||| || Sbjct 63 GGTGGGATTCCTTCCTTGTCTTGAATTTTGGCTTTCACATTCTCGATTGTGTCTGAGGCC 122 Query 195088 TCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || |||||||| || | || ||||| |||| ||| || || || | |||||| Sbjct 123 TCGACTTCAAGAGTGATTGTTTTTCCAGTCAGAGTCTTCACAAAGATCTGCATT 176 >seq83363 Length=456 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| || || || || || ||||| || ||||| || | || || | |||||||| Sbjct 382 AACAAGATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGTCCATCTTC 323 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||| || || || ||||| || || || || ||||| ||||| ||||| |||||||| Sbjct 322 AAGCTGTTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTG 263 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| ||| || ||||| || || || || ||||||||| | || | ||||| Sbjct 262 AATTTTCGCCTTCACATTCTCGATTGTATCAGAGGCTTCCACTTCCAAAGTGATGGTCTT 203 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| ||||||||||| | |||||| Sbjct 202 CCCCGTCAAGGTTTTTACGAAAATTTGCAT 173 Score = 140 bits (154), Expect = 7e-28 Identities = 122/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || ||||| |||||||| || ||||||| || || | ||||||||| Sbjct 153 ACAAGGTGAAGGGTTGACTCCTTTTGAATGTTATAATCGGAGAGTGTACGCCCATCTTCA 94 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| |||||||| ||||| || ||||| || || ||||| ||||| ||||| ||| Sbjct 93 AGTTGCTTTCCTGCGAAAATAAGACGCTGTTGATCAGGTGGAATTCCTTCCTTGTCCTGA 34 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083 ||||| || || ||||||||||| || || Sbjct 33 ATTTTCGCTTTCACATTCTCAATGGTATCAGA 2 >seq182 Length=3864254 Score = 143 bits (158), Expect = 6e-29 Identities = 161/214 (75%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || ||||| || || || |||||||||| |||||| | |||||||| Sbjct 2229609 ACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCTTCC 2229550 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||||||||| || | || ||||| || || |||||||| || || || Sbjct 2229549 AGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGG 2229490 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| |||||||| |||||||| ||| ||||| || ||||| | ||| Sbjct 2229489 ATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 2229433 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || ||||| || || ||||| | ||||||| Sbjct 2229432 TTGCCCGTCAAGGTCTTCACGAAGATCTGCATTT 2229399 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || ||||| || || || |||||||| | |||||| | |||||||| Sbjct 2229837 ACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 2229778 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||||||||| || | || ||||| ||||| |||||||| || || || Sbjct 2229777 AGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGG 2229718 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||| |||||||| ||||| || ||||| | ||||| Sbjct 2229717 ATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTG 2229658 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 2229657 CCGGTCAGGGTCTTCACGAAGATCTGCAT 2229629 >seq103970 Length=412 Score = 131 bits (144), Expect = 4e-25 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||||||||||||||| || || || |||||||||| ||||||| ||||| || Sbjct 177 ACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAGAGTTCGGCCATCCTCC 118 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||| || ||||||||||| || || || || ||||| || ||||| || || ||| Sbjct 117 AATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGAGGGATTCCTTCCTTATCCTGA 58 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083 || || ||| || ||||| |||||||| || Sbjct 57 ATCTTGGCCTTCACATTCTCGATGGTGTCAGA 26 >seq260794 Length=213 Score = 129 bits (142), Expect = 1e-24 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| | ||| ||||| ||||| |||||||| || || |||||||||| | ||| | Sbjct 41 AGTCGGAGAACCAGGTGGAGAGTAGACTCTTTCTGGATGTTGTAATCGGACAAAGTGCGT 100 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||||||||| || || || || ||||| ||||| || || ||||| || || |||||| Sbjct 101 CCATCTTCGAGTTGTTTGCCAGCAAAGATCAGTCGCTGCTGATCTGGGGGGATTCCTTCT 160 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083 ||||| || || || ||| ||||| ||||||||||| || Sbjct 161 TTGTCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCAGA 201 >seq150 Length=4498840 Score = 104 bits (114), Expect = 5e-17 Identities = 148/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || |||||||| || ||||||||||| || | ||||| | ||||| || ||||| Sbjct 34204 GTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGACAGAGTGCGGCCATCCTCTAGCTG 34263 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || | || || || | || || || || || ||||| || |||||||| ||||| Sbjct 34264 TTTGCCCACAAAAATCAGACACTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGGATTTT 34323 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||||| |||||||||||||| ||| || || || ||||| | ||||| || Sbjct 34324 AGCTTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATGGTCTTGCC 34380 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || || || | ||||| Sbjct 34381 CGTCAGGGTCTTCACAAAGATCTGCAT 34407 >seq584 Length=118070 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 |||||||| || ||||||||||| || | |||| ||||| || ||||| || | Sbjct 48999 GTGGACTCATTCTGAATATTGTAGTCTGATGGAGTGTGGCCATCCTCCAGCTGTTTGCTC 49058 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 | || || || | || ||||| || || ||||| || |||||||| ||||| ||| Sbjct 49059 ACAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTTAACTTTG 49118 Query 195064 ACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAG 195121 || ||||||||| ||| | | ||| || |||||||| | ||||| ||| ||| | Sbjct 49119 ACATTCTCAATGATGTCACTGGGCTT--AACCTCAAGGGTGATGGTCTTGCCTATCAGGG 49176 Query 195122 TTTTTACGAACACTTGCAT 195140 | || || || | ||||| Sbjct 49177 TCTTCACAAAGATCTGCAT 49195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1105547889648075