Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq103000 113 3e-20 seq150 109 4e-19 seq584 91.5 1e-13 seq83363 87.8 1e-12 seq312 86.0 4e-12 seq299 86.0 4e-12 seq98 86.0 4e-12 seq182 84.2 1e-11 seq180 82.4 5e-11 >seq103000 Length=415 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| || ||||||||| || || || || ||||| | ||| |||| || Sbjct 194 AACAAGGTGAAGAGTTGATTCTTTCTGGATATTGTAATCAGAAAGAGTGCGTCCATCTTC 253 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || ||| ||||||||||| ||||| |||||||| || | || | || || ||||| Sbjct 254 CAACTGCTTTCCGGCAAAGATTAGCCGTTGCTGATCCGGTGGGATTCCTTCTTTGTCTTG 313 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| || || | | || | || ||||||||| |||| || || ||||| Sbjct 314 AATCTTTGCCTTCACATTTTCAATGGTGTCGGAGGCCTCAACCTCGAGTGTAATTGTTTT 373 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || ||||||||||||||||| Sbjct 374 CCCGGTTAGGGTTTTCACAAAGATCTGCAT 403 Score = 93.3 bits (102), Expect = 3e-14 Identities = 128/177 (72%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 34807 AGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGT 34866 |||| |||||| | || | || || || || || |||||||| || ||||| ||||| | Sbjct 1 AGTCGGAAAGGGTACGGCCGTCTTCTAGTTGCTTGCCGGCAAAAATAAGTCGCTGCTGAT 60 Query 34867 CTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACC 34924 || | || | || |||||||| ||| || ||| || || || || | || Sbjct 61 CTGGTGGGATTCCTTCCTTGTCTTGAATTTTGGCTTTCAC--ATTCTCGATTGTGTCTGA 118 Query 34925 GGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||| || || | || || |||||||| || ||||||||||||||||||||||| Sbjct 119 GGCCTCGACTTCAAGAGTGATTGTTTTTCCAGTCAGAGTCTTCACAAAGATCTGCAT 175 >seq150 Length=4498840 Score = 109 bits (120), Expect = 4e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 || ||||| | ||| || |||||||| || ||||| || || | || |||| || Sbjct 34199 ACTAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGACAGAGTGCGGCCATCCTCT 34258 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || |||| || || | ||||| || | || | ||||||||||| Sbjct 34259 AGCTGTTTGCCCACAAAAATCAGACACTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGG 34318 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||||| || || || | |||| || |||||| |||| ||| ||||| | Sbjct 34319 ATTTTAGCTTTGAC--ATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCT 34376 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| || |||||||||||||||||||| Sbjct 34377 TGCCCGTCAGGGTCTTCACAAAGATCTGCAT 34407 >seq584 Length=118070 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || |||||||| || ||||| || | | | |||| ||| Sbjct 48987 ACCAAGTGCAAGGTGGACTCATTCTGAATATTGTAGTCTGATGGAGTGTGGCCATCCTCC 49046 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| | |||| || || | |||||||| | || | ||||||||||| Sbjct 49047 AGCTGTTTGCTCACAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 49106 Query 34893 ATCTTCTGTTTGACGGATGCT-ATCGAT-TCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||||| || || | ||| |||| || || ||| || | ||| ||||| | Sbjct 49107 ATTTTAACTTTGAC--ATTCTCAATGATGTCACTGGGCTTAACCTCAAGGGTGATGGTCT 49164 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || |||||||||||||||||||| Sbjct 49165 TGCCTATCAGGGTCTTCACAAAGATCTGCAT 49195 >seq83363 Length=456 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || || ||||| ||||| || ||| | ||| |||| || ||||||||||||||||| Sbjct 364 TTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGTCCATCTTCAAGCTGTTTTCCGGCAAA 305 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| ||| | || | || |||||||| ||| ||| || || | Sbjct 304 GATGAGACGCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGAATTTTCGCCTTCAC--A 247 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | ||| ||| || || || | || ||||| || ||||| | || || Sbjct 246 TTCTCGATTGTATCAGAGGCTTCCACTTCCAAAGTGATGGTCTTCCCCGTCAAGGTTTTT 187 Query 34968 ACAAAGATCTGCAT 34981 || || || ||||| Sbjct 186 ACGAAAATTTGCAT 173 >seq312 Length=1320911 Score = 86.0 bits (94), Expect = 4e-12 Identities = 115/157 (73%), Gaps = 5/157 (3%) Strand=Plus/Plus Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || ||||||||||| || |||| || || || |||||||| |||| | ||||||||| Sbjct 1167225 TCCTCCAGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTG 1167284 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTA 34944 || | || |||||| || || | | |||| || |||||| | || ||| | Sbjct 1167285 TCTTGGGTTTTAGCTTTGAC--ATTCTCAGTGGTGTCACTGGGCTCAACCT-GAGGGTGA 1167341 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || ||||| || |||||||||||||||||||| Sbjct 1167342 TGGCCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1167378 >seq299 Length=1488728 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||| || | || |||||||| | ||| ||| ||||| ||||| ||||| || Sbjct 453102 CCTCCCCTTAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 453161 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| ||||||||||| || ||||| || | | ||||||||| | | Sbjct 453162 AGGGTGCGCCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGAAGG 453221 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||| || || ||| || ||||| | | || | |||| || ||| || Sbjct 453222 ATGCCCTCTTTTTCTTGGATCGTCCCCTTGACATTTTCGATGGTGTCACTGGGCTCCACC 453281 Query 34935 TCGACGGTTATGGTTTT 34951 || | ||| ||||| || Sbjct 453282 TCCAGGGTGATGGTCTT 453298 >seq98 Length=6767347 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 34825 CATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34884 |||| ||||||||||| || ||||| || | | ||||||||| | || | ||||| | Sbjct 4449258 CATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTT 4449199 Query 34885 TGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTA 34944 | || |||||| ||||| | | || | |||| || ||| || || | ||| | Sbjct 4449198 TTTCTTGGATCTTCCCCTTGACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGA 4449139 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || ||||| | |||||||| ||||||||||| Sbjct 4449138 TGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 4449102 >seq182 Length=3864254 Score = 84.2 bits (92), Expect = 1e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || ||||| | || |||| |||||||| || || || || Sbjct 2229591 TCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAG 2229532 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || ||||| || ||||| || ||| Sbjct 2229531 ATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 2229472 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || ||||| | |||||||| Sbjct 2229471 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACG 2229412 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 2229411 AAGATCTGCATTTT 2229398 >seq180 Length=3735678 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||| | ||||| || || | || |||| ||||||||||| || | || Sbjct 1580306 TCTTTCTGAACATCGTAGTCTGACAGAGTGCGGCCATCCTCCAGCTGTTTCCCCGTGAAA 1580365 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | | | |||||||||| || || |||||| || Sbjct 1580366 ATCAGATGCTGCTGGTCAGGTGAGATGACCTCCTTGTCTTAGATTTTAGCTTTGAC--AT 1580423 Query 34911 GCT-ATCGAT-TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || ||| | ||| || |||||| |||| ||| ||||| | ||||| | ||||||| Sbjct 1580424 TCTTATCAGTGTCAGTGGACTCAACCTCGAGGGTGATGGTCTGGCCCGTCGGGGTCTTCA 1580483 Query 34969 CAAAGATCTGCAT 34981 |||| |||||||| Sbjct 1580484 CAAAAATCTGCAT 1580496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323538745285800