Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4 114 1e-20 seq39 111 2e-19 seq131755 84.2 2e-11 seq131535 84.2 2e-11 >seq4 Length=22931326 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||||||||| || || | |||||| |||||||| | || ||||||||||||| || | Sbjct 4287783 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCT 4287724 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | |||||| || || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 4287723 TGAGCCAGAAGATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCCGCAAAGG 4287664 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 4287663 CTACAACACGTTCTCC 4287648 Score = 105 bits (116), Expect = 7e-18 Identities = 112/146 (77%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || | ||| |||||||| Sbjct 4289174 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTGGACATCACTCCCATC 4289117 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| ||||| || || || | ||| ||| Sbjct 4289116 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 4289057 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| ||||||||||||| ||| Sbjct 4289056 TCCATAAAGTCAAATGGATTTTCTAC 4289031 >seq39 Length=12483156 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| ||| | || || ||||| || || ||||| || || Sbjct 4319055 TGAAATTCTCCTGACAAGACTCTGCGGGTGTAGATGTTACTGGTGTAAGGTTCAATTGAC 4318996 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| ||||| ||||||||||| || |||||||| | |||| | ||| || Sbjct 4318995 TCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 4318936 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 4318935 TTTCTTATACCATA 4318922 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/171 (73%), Gaps = 4/171 (2%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| |||| |||| || | |||||| || | Sbjct 4321437 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAATTAGGCTCAGCAATATGTATGT 4321378 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || |||||||| || || ||||| ||||||||| |||| | || Sbjct 4321377 TCAAAGACTGGCTTTGATCAATGAAAGCGCCTCTCTCAGCTGCC--ATCTTGAGTACGGT 4321320 Query 47170 TT--TGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 || || | || ||||| || || ||||||| ||| || | ||| || || Sbjct 4321319 TTTCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGG 4321269 >seq131755 Length=364 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || | ||||| ||| ||||||||||| ||||| |||||||| || || |||| Sbjct 248 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTCC 189 Query 18733 ATAAAATCAAATGGATTTT 18751 ||||||||||| ||||||| Sbjct 188 ATAAAATCAAAGGGATTTT 170 >seq131535 Length=364 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || | ||||| ||| ||||||||||| ||||| |||||||| || || |||| Sbjct 117 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTCC 176 Query 18733 ATAAAATCAAATGGATTTT 18751 ||||||||||| ||||||| Sbjct 177 ATAAAATCAAAGGGATTTT 195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560164430529000