Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq221 104 3e-17 >seq221 Length=2697352 Score = 104 bits (114), Expect = 3e-17 Identities = 156/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 2207 ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGAT 2266 ||||| |||| | || || || ||||| | || | || ||| || ||| ||||| Sbjct 2085070 ACTGAGGAACTTACAAGTTGTCACTCACATTGAAAGGCCTAGCAATGTGACCTGTGAGAT 2085011 Query 2267 CCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTT 2326 ||| ||||| || ||||| ||| |||| |||||| ||| | ||| ||| || || Sbjct 2085010 CCACCTGACTTGCTCTGTGGAGAATCCAAATGACGTCATAT---TCAGGTGGCAGATCTC 2084954 Query 2327 GGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCAG 2386 || || || ||||| | || | |||||||| |||||||||||||| || |||| Sbjct 2084953 AGGAAAAACACTTCTGAGGGAAGCAAACCTCACTGTCTCCTGGGACCCCAAAAATGGCAG 2084894 Query 2387 TGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCA 2427 ||| ||| |||||| ||||| || || || |||| |||| Sbjct 2084893 TGAAGAGACCTACACTTGCATAGCTGAGAATCCTGTCAGCA 2084853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627106470081000