Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq240 320 1e-82 seq49 143 2e-29 seq93 91.5 1e-13 seq6 91.5 1e-13 >seq240 Length=2402814 Score = 320 bits (354), Expect = 1e-82 Identities = 444/620 (72%), Gaps = 4/620 (1%) Strand=Plus/Minus Query 29767 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 29826 ||||||| || || || | || ||||| | |||||||| || | ||||| || ||| Sbjct 1020332 GGAAAGGC-CTTGGTTCTCGCTGAAGCTGCATTTTCAGCGGCTCAATGTGATTCATGTAA 1020274 Query 29827 ACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29886 | ||| || ||||||| ||||| ||||| || || || | || || |||| ||| || Sbjct 1020273 ATGTGGGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCTGTGATGTGTGCA 1020214 Query 29887 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 29946 |||||||| ||||| || ||||||||||||||||| ||||| | || || |||||||| Sbjct 1020213 ATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGCATGCCCAGGCCCATGTCT 1020154 Query 29947 CCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATG 30006 ||||||| || ||| ||||| || || ||||| |||| |||||| ||||| || | | Sbjct 1020153 CCCGACCACTCGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAAGG 1020094 Query 30007 GTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATG 30066 | |||| || || || ||| |||| | | ||||| || |||||||| |||| |||| Sbjct 1020093 GCAGGGCAGGGTGGGAGGGCCGTGAGCGCGAGATCTTTTGGATTCCAGGCACACATGATG 1020034 Query 30067 ATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACC 30126 | | ||||| | |||||| | |||| ||| | || |||||||| || || Sbjct 1020033 ACGATTCTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCACCTTCTGCAGCTGGTCTACT 1019974 Query 30127 CCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGG 30186 || || || || |||| ||| || |||| || || || |||||||||||||| Sbjct 1019973 CCTTCGCCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGA 1019914 Query 30187 AACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAA 30246 || ||||| ||||| || || |||| || | ||| ||| ||| ||||||| Sbjct 1019913 AAGCCGTAAACCGGGCCTAGATCTC---CTGCTCTGGTGGAGAATCCCAGGCTGTCCAAG 1019857 Query 30247 AAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAG 30306 ||||||| ||| || ||||||||||||| || || ||||| || ||||| || | | Sbjct 1019856 AAGTCTCGGGACCCACTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCG 1019797 Query 30307 TTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 30366 |||||||| || ||| |||||||||| |||||| || | | ||| || || | Sbjct 1019796 TTTGTGGATCCCTTGATAAACCACAGCAATCCCTCCAAAACATCTTCCCAGAAAACACGT 1019737 Query 30367 TTGGTCGTGAGGAGGGGAAA 30386 ||||| ||||| || ||||| Sbjct 1019736 TTGGTTGTGAGCAGTGGAAA 1019717 >seq49 Length=11369404 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| ||||| || || |||||||||||||| ||||| Sbjct 7921594 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAATAGCTGGCGATGTTGAAGGGC 7921535 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| ||||||| |||||| ||||| || || ||||| |||| | Sbjct 7921534 ACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 7921475 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| ||||| || | || |||||| || || || |||||||| Sbjct 7921474 ACGTAGAACTGGCAAAGGGCGTGGCAGGGCGGGAGGGCCATGAG 7921431 Score = 114 bits (126), Expect = 1e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| || || || ||||||||||| || || ||||| ||||| || || || Sbjct 7918387 CATATCTTTGTATTCGGCCCCAAAATGCCTCCATTGAAAGCCGTAAACCGGGCCTAGATC 7918328 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 ||| ||||| ||| ||| ||| ||||||| ||||||| ||| || |||||||| Sbjct 7918327 TCCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCGTC 7918268 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||||| || || ||||| || ||||| || | ||||||||| || Sbjct 7918267 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 7918220 >seq93 Length=6788731 Score = 91.5 bits (100), Expect = 1e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTC-TC 112138 ||||||||| || || || || | || || ||||| |||| || || ||||| | Sbjct 253572 ATGAGCTCCTTGTGGAGGTTCCTTGAATTCTCTACTGAGTACTAAATTAATTCTGTCCTT 253631 Query 112139 TCAGAGGTCTATT-CTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACG 112197 | | ||||| ||| ||| || || ||||||||||| ||||||||||| || ||||||| Sbjct 253632 TTAAAGGTCGATTTCTTCTCTGGAATGGAGAACCAGGTCTTTCTACCAATAATCACCAAA 253691 Query 112198 TTCTGCTTGCCTCTGACTGAAGACGTAGCGGTCA 112231 ||||| || ||| |||||||| | | ||||| Sbjct 253692 TTCTGTTTACCTTCTACTGAAGAGGCTGTGGTCA 253725 >seq6 Length=20809404 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 11039913 TTGAGTTCTCTACTGAGAACTAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 11039972 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| |||||||||||||| ||||||| ||||| || ||| Sbjct 11039973 ATGGAGAACCAGGTCTTTCTACCCATAATCACCAAATTCTGTTTACCT 11040020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407239502028425