Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq37 87.8 5e-13 seq4 80.6 7e-11 >seq37 Length=12620877 Score = 87.8 bits (96), Expect = 5e-13 Identities = 182/263 (69%), Gaps = 16/263 (6%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGA-TTAGCGGCTAAGTTTATG 1016 |||| | ||| || ||||| ||| ||| ||| | |||| || || || || || | Sbjct 8105049 TTCCTTCTGGGTGCTATGGAAGAGTAGTTCC-ATGTCCAGACTTGGCTGCAAAACACCTC 8104991 Query 1017 ATTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTA 1076 || ||||| || |||||||| || ||| ||||| ||| || || ||||||||||| || Sbjct 8104990 ATAGATGTTGGAGCTGGTGTCATAGATGAAGACTATAGAGGAAATGTTGGTGTTGTACTA 8104931 Query 1077 TTTAATTTTAGC-GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAAT 1135 ||||||||| || | || |||| || | || |||||| | |||| ||||| || Sbjct 8104930 TTTAATTTTGGCAAAGAAAAGTTTGCA-GTGAAAATGGGTGATCGAATTGTACAGTTCAT 8104872 Query 1136 TTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATTC 1189 |||||| | | |||| |||||| | |||| | | ||| |||| || | Sbjct 8104871 CTGTGAA----CGGATTTTTCATCCA--GAGATAGAGAAAGTTCAGGTTTTAGGTGACAC 8104818 Query 1190 GGAAAGGGGTTCTGCAGGATTTG 1212 ||||||||||| | ||| |||| Sbjct 8104817 TGAAAGGGGTTCAGGAGGTTTTG 8104795 >seq4 Length=22931326 Score = 80.6 bits (88), Expect = 7e-11 Identities = 154/219 (70%), Gaps = 16/219 (7%) Strand=Plus/Minus Query 1017 ATTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTA 1076 || ||||| || |||||||| || ||| ||| | || || || |||||||||| || Sbjct 13631283 ATAGATGTAGGAGCTGGTGTCATAGATGAAGATTACAGAGGAAATGTTGGTGTTGCACTA 13631224 Query 1077 TTTAATTTTAGC-GATAAGCGTTTTCATATTTCAAGA-GGTGATAGGATTGCTCAGTTAA 1134 ||||||||| || | || |||| | |||| || | || || | ||||| | | | Sbjct 13631223 TTTAATTTTGGCAAAGAAAAGTTT--AAATTTGAAAAGGGCAATTGAATTGCATGGCTCA 13631166 Query 1135 TTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATT 1188 ||| |||||||| | |||| | ||| |||||| ||| ||| ||||| || Sbjct 13631165 TTTATGAAAAGGATTTTTT---ACCCA--GAAATAGAGGAAGTTCAAGTTTTAGATGAGA 13631111 Query 1189 CGGAAAGGGGTTCTGCAGGATTTGGGTCTAC-CGGAAGA 1226 |||||||||||| | ||| ||||| ||||| |||||| Sbjct 13631110 AGGAAAGGGGTTCAGGAGGCTTTGGTTCTACTGGGAAGA 13631072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138225877094100