Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq103000 145 6e-30 seq83363 140 3e-28 seq103970 107 2e-18 >seq103000 Length=415 Score = 145 bits (160), Expect = 6e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||||| | ||| | ||| | ||||| || |||||||| || ||||||||||| | Sbjct 175 TTCCTCCTCGAAGACGGAGAACAAGGTGAAGAGTTGATTCTTTCTGGATATTGTAATCAG 234 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | |||| ||||| ||||| || ||||| || | || || ||||| || | Sbjct 235 AAAGAGTGCGTCCATCTTCCAACTGCTTTCCGGCAAAGATTAGCCGTTGCTGATCCGGTG 294 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || |||||||| |||||||| ||| || ||| |||| | ||||| || | || | Sbjct 295 GGATTCCTTCTTTGTCTTGAATCTTTGCCTTCACATTTTCAATGGTGTCGGAGGCCTCAA 354 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 | || || || | ||||| ||||||| ||||| ||||| ||||||||| Sbjct 355 CCTCGAGTGTAATTGTTTTCCCGGTTAGGGTTTTCACAAAGATCTGCATG 404 Score = 105 bits (116), Expect = 5e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || || | |||||| || ||||| || | ||||| ||||| || || || ||||| || Sbjct 21 TCTTCTAGTTGCTTGCCGGCAAAAATAAGTCGCTGCTGATCTGGTGGGATTCCTTCCTTG 80 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 ||||||||||| ||| ||| | || | ||||| || | || ||||||||||||| Sbjct 81 TCTTGAATTTTGGCTTTCACATTCTCGATTGTGTCTGAGGCCTCGACTTCAAGAGTGATT 140 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 ||||| || || | ||| || ||||| |||||||| | | |||||| Sbjct 141 GTTTTTCCAGTCAGAGTCTTCACAAAGATCTGCATTCCTCCTCGAAGA 188 >seq83363 Length=456 Score = 140 bits (154), Expect = 3e-28 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||||| | ||| | ||| | ||| ||||| ||||| ||||| || ||||| || | Sbjct 401 TTCCTCCTCGGAGACGGAGAACAAGATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAG 342 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 || || | |||| || | || || || ||||| || | |||||| ||||| || | Sbjct 341 AGAGGGTACGTCCATCTTCAAGCTGTTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTG 282 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| || ||||||||||| || ||| | || | || ||||| | ||||| Sbjct 281 GAATTCCTTCCTTGTCTTGAATTTTCGCCTTCACATTCTCGATTGTATCAGAGGCTTCCA 222 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAA 101480 |||| | ||||| || || || || || |||||||| || || |||||| | | |||| Sbjct 221 CTTCCAAAGTGATGGTCTTCCCCGTCAAGGTTTTTACGAAAATTTGCATGCCTCCTCGAA 162 Query 101481 GA 101482 || Sbjct 161 GA 160 Score = 102 bits (112), Expect = 6e-17 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||| | ||| | || | |||||||| || || ||||| || || ||||||| | Sbjct 171 CCTCCTCGAAGACGGAGCACAAGGTGAAGGGTTGACTCCTTTTGAATGTTATAATCGGAG 112 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | |||||| ||||| || || | |||||||||||| || ||| Sbjct 111 AGTGTACGCCCATCTTCAAGTTGCTTTCCTGCGAAAATAAGACGCTGTTGATCAGGTGGA 52 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGAC 101413 || ||||| || || |||||||| ||| ||| | || | || |||||| Sbjct 51 ATTCCTTCCTTGTCCTGAATTTTCGCTTTCACATTCTCAATGGTATCAGAC 1 >seq103970 Length=412 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| | | ||| | || | ||||| || || || || || || |||||||||| Sbjct 197 TTCCTCCACGAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGG 138 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||||| | |||| ||||||||||| || || || || | |||||| ||||| || | Sbjct 137 ACAGAGTTCGGCCATCCTCCAATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGAG 78 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| ||||| ||||| || || ||| | || | |||||||| | || | Sbjct 77 GGATTCCTTCCTTATCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCAGAGGCCTCAA 18 Query 101421 CTTCAAGAGTGA 101432 | || ||||||| Sbjct 17 CCTCGAGAGTGA 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394941917040825