Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq61 178 2e-39 seq78131 136 7e-27 seq23 93.3 8e-14 >seq61 Length=9284659 Score = 178 bits (196), Expect = 2e-39 Identities = 185/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 1472405 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 1472464 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | || || ||||||| || ||||| || | |||||| |||||| Sbjct 1472465 TCCCGGAGGAGGCCGGCAGTGCTGGACAGCCCCGCGTTCTCGGCCTTGAGTGTCTTCACC 1472524 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| |||||||| || ||||| || ||| ||||| || ||||| |||| Sbjct 1472525 TTGTCCTCCAGGCGCGCGATACGCTCCAGCTTCCGCTTCCGGCACTTAGTGGCCGCCAGC 1472584 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | |||||| || | |||||||| |||||||| ||||||| ||| || Sbjct 1472585 CGGTTCCGCAGCCGCTTACGCTCTACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 1472644 Query 241625 GAC 241627 ||| Sbjct 1472645 GAC 1472647 >seq78131 Length=470 Score = 136 bits (150), Expect = 7e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 359 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 300 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||| ||| ||||||||| ||||| || |||| |||||| ||||| Sbjct 299 TCCGTGTTCTGGCTCTTAAGCGTCTTCACTTTTTCCTCGAGGCGCGAGATGCGCTCCAGC 240 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || | ||| || |||||||| Sbjct 239 TTGCGCTTGCGGCACTTGGAGGCAGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTA 180 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 179 ATGCGCTCCTGCGTGTCCATGTCGATAGGCGAC 147 >seq23 Length=14034509 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 12093587 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCG 12093646 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| |||||||||| Sbjct 12093647 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 12093706 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 12093707 ATGGGGGAC 12093715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928310569824000