Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq96 365 5e-96 seq72 176 5e-39 seq22 107 2e-18 >seq96 Length=6608501 Score = 365 bits (404), Expect = 5e-96 Identities = 679/986 (69%), Gaps = 12/986 (1%) Strand=Plus/Plus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 || |||||||| ||||||| ||| |||| ||| || | ||| | |||| ||| || ||| Sbjct 981470 TGCCGCAGATGCTCGTCCAAACACTGGATGGCAAAGAAGTCTATGTCTGTGTCAAACTTA 981529 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || ||||| ||||| ||| | || ||||||| | ||| || | ||||| || Sbjct 981530 TTGGCAAACAGGTGGTGCACGTGC---AGCATCCAGTTTAAGTCACCAGCTCCGAAAACA 981586 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || || || || | ||| | |||| |||| |||||||| | || || || | || ||| Sbjct 981587 CATACAGAGCGCACGTGGATGCCGCTGCACGGCGGGTAGGGGGCGCCCTTGGAAACATCA 981646 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 ||||| ||||||||||||| ||||||||||| || | |||||||| || ||||||| Sbjct 981647 CCTTCAAAGTACTGCCACTTAACAAACCTGGCAATAGAGTGCATGTCTGACATGTCGTAC 981706 Query 160287 TT-GTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAG 160345 || | || | ||| | | |||||| | | ||||| | ||| | |||||||| || Sbjct 981707 TTAGAACTTAAGGACAGTGAGCCCGGGA-CTTCAGGCATCCTCTGAATAGTGGCCCAGAG 981765 Query 160346 GTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTC 160405 | ||||| |||||||| || || || | ||| ||||| |||| | |||| | Sbjct 981766 ATACTCGTCTGGGCTGTATGTATCTTTTGCCCACTCCATAAACTTCCGGATTTTTTCATT 981825 Query 160406 CCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATAT 160465 | || || | || || || | || ||||| || |||||||| || || | Sbjct 981826 CTCAAGCACATAGCCCACATACTCCCTACTGACCACAAAATAGGCGCTGCCTGAAAACAG 981885 Query 160466 CGGTATGGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCA 160524 ||| | | ||| || ||| ||| ||| || |||| | || | ||| || | Sbjct 981886 CGGCGTTTCAAGAGGAGGA-TGTATTTTGTCAGTCCCCATGTTTGTCAGCTTTCCATTAA 981944 Query 160525 CCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTA 160584 | | | | |||| |||||||| | | || || | ||||| ||||| |||| Sbjct 981945 CTACTGTATAGTGCTTTTTCCACCTTTCTTTTTTATGGGCGGGCATTTTCTCCGTTTCTA 982004 Query 160585 GACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCG 160644 | |||| | || | ||| || |||| | |||| || || ||||| || || | || Sbjct 982005 GGTTGTTCTCGCCCATTAACGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATCG 982064 Query 160645 GAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGT 160704 |||| || ||||||| | || |||| ||||||||| | ||| ||| | || |||| Sbjct 982065 GAAAATCCATACCGCAGAGATTGATCAAGTACTTCCAGTCCGCATTCATTTTGTAGAGGT 982124 Query 160705 CCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTA 160764 || |||||| || | || ||||| || |||||||| || || ||||| || |||| | Sbjct 982125 CCTGCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCACGAGGCATACACCACACTCTCCA 982184 Query 160765 GTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG--AAA 160822 ||| ||||||||||| |||||| |||||| ||| | || || | ||| | ||| ||| Sbjct 982185 GTTGCCTGGCCACAAAAACGTTACTGAAACAAGACGCAATGCCAATCACTG-CAGCCAAA 982243 Query 160823 GAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 | || | || | ||| ||||||||| | ||| || | ||||||||| ||||| Sbjct 982244 AAGGAT-TCCTCGGATTTTTTGTCCACGTGAATGCAGTAGAAATTCTGAGGCATATAGAT 982302 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 |||||| || | ||| |||| ||| || || || ||||| | ||| || || || ||||| Sbjct 982303 GGCCCTCAG-AGCCTGTCGAGCATTTCGATTTTGTGATGAACCACTATGGAATATGCTAT 982361 Query 160943 CGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAA 161002 |||||||| | ||| || ||| |||| | | ||| || ||| ||||||| || Sbjct 982362 TGGAAACTCTGCCTCTTCTTTACTAAGGGGTTCTACAATGTATTTGCGCTTCTTGATGAA 982421 Query 161003 ATAATCACAATCCCGCGTCATGTTGA 161028 | || |||||| | |||||||||| Sbjct 982422 AGAAGTACAATCACTGGTCATGTTGA 982447 >seq72 Length=8065517 Score = 176 bits (194), Expect = 5e-39 Identities = 219/300 (73%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 168170 TCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAAGCAGCCTTCGTCCTC 168229 ||| || ||||| || || || || || |||||||||||| || | || || || ||||| Sbjct 2511 TCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGCACTTGTAACACCCCTCATCCTC 2452 Query 168230 CACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAACTGCGTTATGTTCAC 168289 || |||||||||||| || || | |||||||| ||| |||| ||| || ||||| | Sbjct 2451 CAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGAGTCCCAGCTGGGTGATGTTTAT 2392 Query 168290 ACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCTGAAGGTGGCCATGTT 168349 || ||||| | ||| || |||||||| || |||||||||||||||||| |||||| Sbjct 2391 CTTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGTTCTCGCTGAAGGTGATCATGTT 2332 Query 168350 CTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAACCTCTTTATCGGTCTG 168409 ||||| || ||||| || || ||||| || || |||| || |||| | || Sbjct 2331 TTCCGGACTTACAGCCTTGATTTTTTGCCATGTCACAATCAAGACTTCTTGGGGATTTTG 2272 Query 168410 CAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTCATCTTGAGTTACGAC 168469 ||| || || || | ||||| || ||||||||| | |||| |||| || || || || Sbjct 2271 CAGAGAGCAGCTTAAAGAAGCAGGTGTGTTCAGCGGCTCTCTTACATCCTGGGTCACCAC 2212 Score = 114 bits (126), Expect = 1e-20 Identities = 167/233 (72%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 167871 CCATTGCTAAGCGTTTGCC-GTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATAT 167929 || ||| | | ||||| || ||| || || ||||| |||| | || |||| ||| || Sbjct 5128 CCTTTGTTCACCGTTTCCCTGTA-GTTGGTCACAGTCCCCAGGTACAGCACCTGGCAGAT 5070 Query 167930 CACCTCTCCGTTTCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACT 167989 |||||| || || || |||||||| || ||||| || || | ||||| || ||| Sbjct 5069 CACCTCC---TTCCCCACCTGACTCTTGGGGTCTTTGACCTGGAGGATGCTGGTGACAGA 5013 Query 167990 TGTAGTTCCATTGCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCAC 168049 ||| || |||||| | ||| | | | | || |||||||||||||| || || | || Sbjct 5012 TGTTGTCCCATTGGGGTGTGAGAGAATCTCAGTACTGTTCTCAATCCCCGACCCAGAGAC 4953 Query 168050 CTTCCAGAATATTACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 ||||||| | || ||||| || || || || | |||||||| || ||||||| Sbjct 4952 CTTCCAGGAGATCACAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 4900 >seq22 Length=14081385 Score = 107 bits (118), Expect = 2e-18 Identities = 170/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 176182 TCCATTGAAAGTATGTGTTGTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTA 176241 |||| | |||||| | ||| | | | |||||| | |||| | | ||||| ||| Sbjct 4700665 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTGTCTACTTCCTTCAGATACTTTG 4700724 Query 176242 CTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGT 176301 |||| |||| || |||| |||||| | ||||| || |||| | || |||||| || | Sbjct 4700725 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 4700784 Query 176302 TTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGC 176361 | ||||| |||| || || || || ||||| | || || | | || | || | | Sbjct 4700785 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCGT 4700844 Query 176362 GGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACT 176421 ||||| |||||||| |||||| || |||| |||||||||||||| | | ||| || | Sbjct 4700845 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 4700904 Query 176422 TACA 176425 | || Sbjct 4700905 TGCA 4700908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575222562711000